Be able to assign branches on multiple repositories

Version5.5.1
Build number4306
Build date5/20/14

When I have multiple repositories, I should be able to assign branches as needed.

On "Plan Configutaion/Repositories", I have Repo1(default) and Repo2.
Both of them are pointing to develop branch from Stash (git).

On "Branches" I have master. When I click on the master link and go to "Source repository" tab, it only shows Repo1. Therefore, I cannot choose branch for Repo2.