Medium Although I reproduced this in Crowd, it probably affects JIRA/Confluence with embedded Crowd as well.
Steps to Reproduce
- Create a group named "testgroup" in Active Directory in a particular OU
- Create a nested OU within that OU
- Within the nested OU, create a new group named "testgroup" but with different pre-Windows 2000 name
- Make sure both groups have at least one member
- Create a directory within Crowd so that all of the above are within sync scope
- Sync the directory
In Postgres, no errors are displayed in atlassian-crowd.log, but the sync never ends.
In MySQL, the sync eventually ends but encounters errors similar to the following:
2011-04-29 16:32:53,066 scheduler_Worker-9 WARN [org.hibernate.util.JDBCExceptionReporter] SQL Error: 1205, SQLState: 41000
2011-04-29 16:32:53,067 scheduler_Worker-9 ERROR [org.hibernate.util.JDBCExceptionReporter] Lock wait timeout exceeded; try restarting transaction
2011-04-29 16:32:53,069 scheduler_Worker-9 ERROR [hibernate.event.def.AbstractFlushingEventListener] Could not synchronize database state with session
org.hibernate.exception.GenericJDBCException: Could not execute JDBC batch update
and
2011-04-29 16:33:46,296 scheduler_Worker-9 ERROR [persistence.hibernate.batch.AbstractBatchProcessor] Could not process class com.atlassian.crowd.model.membership.InternalMembership: com.atlassian.crowd.model.membership.InternalMembership@49b3a360[parentId=917506,childId=884740,membershipType=GROUP_USER,groupType=GROUP,parentName=testgroup,lowerParentName=testgroup,childName=SpaceUser,lowerChildName=spaceuser,directoryId=851969]
org.hibernate.exception.GenericJDBCException: Could not execute JDBC batch update
Log of the full sync in MySQL, for reference:
2011-04-29 16:31:59,159 scheduler_Worker-9 INFO [atlassian.crowd.directory.DbCachingRemoteDirectory] full synchronisation for directory [ 851969 ] starting 2011-04-29 16:32:00,548 pool-3-thread-1 INFO [directory.ldap.cache.UsnChangedCacheRefresher] found [ 4 ] remote users in [ 1365ms ] 2011-04-29 16:32:01,089 scheduler_Worker-9 INFO [atlassian.crowd.directory.DbCachingRemoteDirectoryCache] scanning [ 4 ] users to add or update 2011-04-29 16:32:01,090 scheduler_Worker-9 INFO [atlassian.crowd.directory.DbCachingRemoteDirectoryCache] scanned and compared [ 4 ] users for update in DB cache in [ 14ms ] 2011-04-29 16:32:01,090 scheduler_Worker-9 INFO [atlassian.crowd.directory.DbCachingRemoteDirectoryCache] adding [ 4 ] users 2011-04-29 16:32:01,151 scheduler_Worker-9 INFO [persistence.hibernate.batch.AbstractBatchProcessor] processed batch [ 1 ] of [ 1 ] [ 100.0 % ] 2011-04-29 16:32:01,152 scheduler_Worker-9 INFO [atlassian.crowd.directory.DbCachingRemoteDirectoryCache] added [ 4 ] users in [ 62ms ] 2011-04-29 16:32:01,152 scheduler_Worker-9 INFO [atlassian.crowd.directory.DbCachingRemoteDirectoryCache] synchronised [ 4 ] users in [ 76ms ] 2011-04-29 16:32:01,154 scheduler_Worker-9 INFO [atlassian.crowd.directory.DbCachingRemoteDirectoryCache] scanned and compared [ 4 ] users for delete in DB cache in [ 2ms ] 2011-04-29 16:32:01,155 scheduler_Worker-9 INFO [atlassian.crowd.directory.DbCachingRemoteDirectoryCache] scanned for deleted users in [ 3ms ] 2011-04-29 16:32:01,247 pool-3-thread-2 INFO [directory.ldap.cache.UsnChangedCacheRefresher] found [ 3 ] remote groups in [ 2059ms ] 2011-04-29 16:32:01,247 scheduler_Worker-9 INFO [atlassian.crowd.directory.DbCachingRemoteDirectoryCache] scanning [ 3 ] groups to add or update 2011-04-29 16:32:01,257 scheduler_Worker-9 INFO [atlassian.crowd.directory.DbCachingRemoteDirectoryCache] scanned and compared [ 3 ] groups for update in DB cache in [ 9ms ] 2011-04-29 16:32:01,264 scheduler_Worker-9 INFO [persistence.hibernate.batch.AbstractBatchProcessor] processed batch [ 1 ] of [ 1 ] [ 100.0 % ] 2011-04-29 16:32:01,265 scheduler_Worker-9 INFO [atlassian.crowd.directory.DbCachingRemoteDirectoryCache] added [ 2 ] groups in [ 8ms ] 2011-04-29 16:32:01,266 scheduler_Worker-9 INFO [atlassian.crowd.directory.DbCachingRemoteDirectoryCache] synchronized [ 3 ] groups in [ 18ms ] 2011-04-29 16:32:01,269 scheduler_Worker-9 INFO [atlassian.crowd.directory.DbCachingRemoteDirectoryCache] scanned and compared [ 3 ] groups for delete in DB cache in [ 3ms ] 2011-04-29 16:32:01,269 scheduler_Worker-9 INFO [directory.ldap.cache.UsnChangedCacheRefresher] found [ 2 ] remote user-group memberships in [ 0ms ] 2011-04-29 16:32:01,269 scheduler_Worker-9 INFO [directory.ldap.cache.UsnChangedCacheRefresher] found [ 0 ] remote group-group memberships in [ 0ms ] 2011-04-29 16:32:01,295 scheduler_Worker-9 INFO [persistence.hibernate.batch.AbstractBatchProcessor] processed batch [ 1 ] of [ 1 ] [ 100.0 % ] 2011-04-29 16:32:01,296 scheduler_Worker-9 INFO [atlassian.crowd.directory.DbCachingRemoteDirectoryCache] added [ 2 ] user members to [ testgroup ] in [ 15ms ] 2011-04-29 16:32:01,301 scheduler_Worker-9 INFO [directory.ldap.cache.UsnChangedCacheRefresher] found [ 0 ] remote user-group memberships in [ 0ms ] 2011-04-29 16:32:01,301 scheduler_Worker-9 INFO [directory.ldap.cache.UsnChangedCacheRefresher] found [ 0 ] remote group-group memberships in [ 0ms ] 2011-04-29 16:32:01,310 scheduler_Worker-9 INFO [directory.ldap.cache.UsnChangedCacheRefresher] found [ 1 ] remote user-group memberships in [ 0ms ] 2011-04-29 16:32:01,310 scheduler_Worker-9 INFO [directory.ldap.cache.UsnChangedCacheRefresher] found [ 0 ] remote group-group memberships in [ 0ms ] 2011-04-29 16:32:01,323 scheduler_Worker-9 INFO [atlassian.crowd.directory.DbCachingRemoteDirectoryCache] removed [ 1 ] user members from [ testgroup ] in [ 10ms ] 2011-04-29 16:32:01,326 scheduler_Worker-9 INFO [directory.ldap.cache.UsnChangedCacheRefresher] found [ 2 ] remote user-group memberships in [ 0ms ] 2011-04-29 16:32:01,327 scheduler_Worker-9 INFO [directory.ldap.cache.UsnChangedCacheRefresher] found [ 0 ] remote group-group memberships in [ 0ms ] 2011-04-29 16:32:53,066 scheduler_Worker-9 WARN [org.hibernate.util.JDBCExceptionReporter] SQL Error: 1205, SQLState: 41000 2011-04-29 16:32:53,067 scheduler_Worker-9 ERROR [org.hibernate.util.JDBCExceptionReporter] Lock wait timeout exceeded; try restarting transaction 2011-04-29 16:32:53,069 scheduler_Worker-9 ERROR [hibernate.event.def.AbstractFlushingEventListener] Could not synchronize database state with session org.hibernate.exception.GenericJDBCException: Could not execute JDBC batch update at org.hibernate.exception.SQLStateConverter.handledNonSpecificException(SQLStateConverter.java:103) at org.hibernate.exception.SQLStateConverter.convert(SQLStateConverter.java:91) at org.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:43) at org.hibernate.jdbc.AbstractBatcher.executeBatch(AbstractBatcher.java:253) at org.hibernate.engine.ActionQueue.executeActions(ActionQueue.java:237) at org.hibernate.engine.ActionQueue.executeActions(ActionQueue.java:141) at org.hibernate.event.def.AbstractFlushingEventListener.performExecutions(AbstractFlushingEventListener.java:298) at org.hibernate.event.def.DefaultFlushEventListener.onFlush(DefaultFlushEventListener.java:27) at org.hibernate.impl.SessionImpl.flush(SessionImpl.java:1000) at com.atlassian.crowd.util.persistence.hibernate.batch.hibernate3.Hibernate3BatchProcessor.flushSession(Hibernate3BatchProcessor.java:45) at com.atlassian.crowd.util.persistence.hibernate.batch.hibernate3.Hibernate3BatchProcessor.commitTransaction(Hibernate3BatchProcessor.java:122) at com.atlassian.crowd.util.persistence.hibernate.batch.hibernate3.Hibernate3BatchProcessor.afterProcessBatch(Hibernate3BatchProcessor.java:91) at com.atlassian.crowd.util.persistence.hibernate.batch.AbstractBatchProcessor.processBatch(AbstractBatchProcessor.java:160) at com.atlassian.crowd.util.persistence.hibernate.batch.AbstractBatchProcessor.execute(AbstractBatchProcessor.java:132) at com.atlassian.crowd.dao.membership.MembershipDAOHibernate.addAll(MembershipDAOHibernate.java:303) at com.atlassian.crowd.dao.membership.MembershipDAOHibernate.addAllUsersToGroup(MembershipDAOHibernate.java:64) at com.atlassian.crowd.directory.CachingDirectory.addAllUsersToGroup(CachingDirectory.java:128) at com.atlassian.crowd.directory.DbCachingRemoteDirectoryCache.syncUserMembershipsForGroup(DbCachingRemoteDirectoryCache.java:697) at com.atlassian.crowd.directory.ldap.cache.UsnChangedCacheRefresher.synchroniseMembershipsForGroup(UsnChangedCacheRefresher.java:110) at com.atlassian.crowd.directory.ldap.cache.AbstractCacheRefresher.synchroniseMemberships(AbstractCacheRefresher.java:70) at com.atlassian.crowd.directory.ldap.cache.AbstractCacheRefresher.synchroniseAll(AbstractCacheRefresher.java:40) at com.atlassian.crowd.directory.ldap.cache.UsnChangedCacheRefresher.synchroniseAll(UsnChangedCacheRefresher.java:212) at com.atlassian.crowd.directory.DbCachingRemoteDirectory.synchroniseCache(DbCachingRemoteDirectory.java:645) at com.atlassian.crowd.manager.directory.DirectorySynchroniserHelperImpl.synchronise(DirectorySynchroniserHelperImpl.java:84) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:182) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:149) at com.atlassian.spring.interceptors.SpringProfilingInterceptor.invoke(SpringProfilingInterceptor.java:20) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171) at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:106) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171) at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:111) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:204) at $Proxy6.synchronise(Unknown Source) at com.atlassian.crowd.manager.directory.DirectorySynchroniserImpl.synchronise(DirectorySynchroniserImpl.java:59) at com.atlassian.crowd.directory.DbCachingDirectoryPoller.pollChanges(DbCachingDirectoryPoller.java:50) at com.atlassian.crowd.manager.directory.monitor.poller.DirectoryPollerJobBean.executeInternal(DirectoryPollerJobBean.java:29) at org.springframework.scheduling.quartz.QuartzJobBean.execute(QuartzJobBean.java:86) at org.quartz.core.JobRunShell.run(JobRunShell.java:195) at org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:520) Caused by: java.sql.BatchUpdateException: Lock wait timeout exceeded; try restarting transaction at com.mysql.jdbc.PreparedStatement.executeBatchSerially(PreparedStatement.java:2007) at com.mysql.jdbc.PreparedStatement.executeBatch(PreparedStatement.java:1443) at com.mchange.v2.c3p0.impl.NewProxyPreparedStatement.executeBatch(NewProxyPreparedStatement.java:1723) at org.hibernate.jdbc.BatchingBatcher.doExecuteBatch(BatchingBatcher.java:48) at org.hibernate.jdbc.AbstractBatcher.executeBatch(AbstractBatcher.java:246) ... 41 more 2011-04-29 16:32:53,072 scheduler_Worker-9 WARN [persistence.hibernate.batch.AbstractBatchProcessor] batch failed falling back to individual processing org.hibernate.exception.GenericJDBCException: Could not execute JDBC batch update at org.hibernate.exception.SQLStateConverter.handledNonSpecificException(SQLStateConverter.java:103) at org.hibernate.exception.SQLStateConverter.convert(SQLStateConverter.java:91) at org.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:43) at org.hibernate.jdbc.AbstractBatcher.executeBatch(AbstractBatcher.java:253) at org.hibernate.engine.ActionQueue.executeActions(ActionQueue.java:237) at org.hibernate.engine.ActionQueue.executeActions(ActionQueue.java:141) at org.hibernate.event.def.AbstractFlushingEventListener.performExecutions(AbstractFlushingEventListener.java:298) at org.hibernate.event.def.DefaultFlushEventListener.onFlush(DefaultFlushEventListener.java:27) at org.hibernate.impl.SessionImpl.flush(SessionImpl.java:1000) at com.atlassian.crowd.util.persistence.hibernate.batch.hibernate3.Hibernate3BatchProcessor.flushSession(Hibernate3BatchProcessor.java:45) at com.atlassian.crowd.util.persistence.hibernate.batch.hibernate3.Hibernate3BatchProcessor.commitTransaction(Hibernate3BatchProcessor.java:122) at com.atlassian.crowd.util.persistence.hibernate.batch.hibernate3.Hibernate3BatchProcessor.afterProcessBatch(Hibernate3BatchProcessor.java:91) at com.atlassian.crowd.util.persistence.hibernate.batch.AbstractBatchProcessor.processBatch(AbstractBatchProcessor.java:160) at com.atlassian.crowd.util.persistence.hibernate.batch.AbstractBatchProcessor.execute(AbstractBatchProcessor.java:132) at com.atlassian.crowd.dao.membership.MembershipDAOHibernate.addAll(MembershipDAOHibernate.java:303) at com.atlassian.crowd.dao.membership.MembershipDAOHibernate.addAllUsersToGroup(MembershipDAOHibernate.java:64) at com.atlassian.crowd.directory.CachingDirectory.addAllUsersToGroup(CachingDirectory.java:128) at com.atlassian.crowd.directory.DbCachingRemoteDirectoryCache.syncUserMembershipsForGroup(DbCachingRemoteDirectoryCache.java:697) at com.atlassian.crowd.directory.ldap.cache.UsnChangedCacheRefresher.synchroniseMembershipsForGroup(UsnChangedCacheRefresher.java:110) at com.atlassian.crowd.directory.ldap.cache.AbstractCacheRefresher.synchroniseMemberships(AbstractCacheRefresher.java:70) at com.atlassian.crowd.directory.ldap.cache.AbstractCacheRefresher.synchroniseAll(AbstractCacheRefresher.java:40) at com.atlassian.crowd.directory.ldap.cache.UsnChangedCacheRefresher.synchroniseAll(UsnChangedCacheRefresher.java:212) at com.atlassian.crowd.directory.DbCachingRemoteDirectory.synchroniseCache(DbCachingRemoteDirectory.java:645) at com.atlassian.crowd.manager.directory.DirectorySynchroniserHelperImpl.synchronise(DirectorySynchroniserHelperImpl.java:84) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:182) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:149) at com.atlassian.spring.interceptors.SpringProfilingInterceptor.invoke(SpringProfilingInterceptor.java:20) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171) at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:106) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171) at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:111) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:204) at $Proxy6.synchronise(Unknown Source) at com.atlassian.crowd.manager.directory.DirectorySynchroniserImpl.synchronise(DirectorySynchroniserImpl.java:59) at com.atlassian.crowd.directory.DbCachingDirectoryPoller.pollChanges(DbCachingDirectoryPoller.java:50) at com.atlassian.crowd.manager.directory.monitor.poller.DirectoryPollerJobBean.executeInternal(DirectoryPollerJobBean.java:29) at org.springframework.scheduling.quartz.QuartzJobBean.execute(QuartzJobBean.java:86) at org.quartz.core.JobRunShell.run(JobRunShell.java:195) at org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:520) Caused by: java.sql.BatchUpdateException: Lock wait timeout exceeded; try restarting transaction at com.mysql.jdbc.PreparedStatement.executeBatchSerially(PreparedStatement.java:2007) at com.mysql.jdbc.PreparedStatement.executeBatch(PreparedStatement.java:1443) at com.mchange.v2.c3p0.impl.NewProxyPreparedStatement.executeBatch(NewProxyPreparedStatement.java:1723) at org.hibernate.jdbc.BatchingBatcher.doExecuteBatch(BatchingBatcher.java:48) at org.hibernate.jdbc.AbstractBatcher.executeBatch(AbstractBatcher.java:246) ... 41 more 2011-04-29 16:33:46,247 scheduler_Worker-9 WARN [org.hibernate.util.JDBCExceptionReporter] SQL Error: 1205, SQLState: 41000 2011-04-29 16:33:46,247 scheduler_Worker-9 ERROR [org.hibernate.util.JDBCExceptionReporter] Lock wait timeout exceeded; try restarting transaction 2011-04-29 16:33:46,247 scheduler_Worker-9 ERROR [hibernate.event.def.AbstractFlushingEventListener] Could not synchronize database state with session org.hibernate.exception.GenericJDBCException: Could not execute JDBC batch update at org.hibernate.exception.SQLStateConverter.handledNonSpecificException(SQLStateConverter.java:103) at org.hibernate.exception.SQLStateConverter.convert(SQLStateConverter.java:91) at org.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:43) at org.hibernate.jdbc.AbstractBatcher.executeBatch(AbstractBatcher.java:253) at org.hibernate.engine.ActionQueue.executeActions(ActionQueue.java:237) at org.hibernate.engine.ActionQueue.executeActions(ActionQueue.java:141) at org.hibernate.event.def.AbstractFlushingEventListener.performExecutions(AbstractFlushingEventListener.java:298) at org.hibernate.event.def.DefaultFlushEventListener.onFlush(DefaultFlushEventListener.java:27) at org.hibernate.impl.SessionImpl.flush(SessionImpl.java:1000) at com.atlassian.crowd.util.persistence.hibernate.batch.hibernate3.Hibernate3BatchProcessor.flushSession(Hibernate3BatchProcessor.java:45) at com.atlassian.crowd.util.persistence.hibernate.batch.hibernate3.Hibernate3BatchProcessor.commitTransaction(Hibernate3BatchProcessor.java:122) at com.atlassian.crowd.util.persistence.hibernate.batch.hibernate3.Hibernate3BatchProcessor.afterProcessIndividual(Hibernate3BatchProcessor.java:106) at com.atlassian.crowd.util.persistence.hibernate.batch.AbstractBatchProcessor.processIndividual(AbstractBatchProcessor.java:187) at com.atlassian.crowd.util.persistence.hibernate.batch.AbstractBatchProcessor.processBatch(AbstractBatchProcessor.java:168) at com.atlassian.crowd.util.persistence.hibernate.batch.AbstractBatchProcessor.execute(AbstractBatchProcessor.java:132) at com.atlassian.crowd.dao.membership.MembershipDAOHibernate.addAll(MembershipDAOHibernate.java:303) at com.atlassian.crowd.dao.membership.MembershipDAOHibernate.addAllUsersToGroup(MembershipDAOHibernate.java:64) at com.atlassian.crowd.directory.CachingDirectory.addAllUsersToGroup(CachingDirectory.java:128) at com.atlassian.crowd.directory.DbCachingRemoteDirectoryCache.syncUserMembershipsForGroup(DbCachingRemoteDirectoryCache.java:697) at com.atlassian.crowd.directory.ldap.cache.UsnChangedCacheRefresher.synchroniseMembershipsForGroup(UsnChangedCacheRefresher.java:110) at com.atlassian.crowd.directory.ldap.cache.AbstractCacheRefresher.synchroniseMemberships(AbstractCacheRefresher.java:70) at com.atlassian.crowd.directory.ldap.cache.AbstractCacheRefresher.synchroniseAll(AbstractCacheRefresher.java:40) at com.atlassian.crowd.directory.ldap.cache.UsnChangedCacheRefresher.synchroniseAll(UsnChangedCacheRefresher.java:212) at com.atlassian.crowd.directory.DbCachingRemoteDirectory.synchroniseCache(DbCachingRemoteDirectory.java:645) at com.atlassian.crowd.manager.directory.DirectorySynchroniserHelperImpl.synchronise(DirectorySynchroniserHelperImpl.java:84) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:182) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:149) at com.atlassian.spring.interceptors.SpringProfilingInterceptor.invoke(SpringProfilingInterceptor.java:20) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171) at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:106) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171) at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:111) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:204) at $Proxy6.synchronise(Unknown Source) at com.atlassian.crowd.manager.directory.DirectorySynchroniserImpl.synchronise(DirectorySynchroniserImpl.java:59) at com.atlassian.crowd.directory.DbCachingDirectoryPoller.pollChanges(DbCachingDirectoryPoller.java:50) at com.atlassian.crowd.manager.directory.monitor.poller.DirectoryPollerJobBean.executeInternal(DirectoryPollerJobBean.java:29) at org.springframework.scheduling.quartz.QuartzJobBean.execute(QuartzJobBean.java:86) at org.quartz.core.JobRunShell.run(JobRunShell.java:195) at org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:520) Caused by: java.sql.BatchUpdateException: Lock wait timeout exceeded; try restarting transaction at com.mysql.jdbc.PreparedStatement.executeBatchSerially(PreparedStatement.java:2007) at com.mysql.jdbc.PreparedStatement.executeBatch(PreparedStatement.java:1443) at com.mchange.v2.c3p0.impl.NewProxyPreparedStatement.executeBatch(NewProxyPreparedStatement.java:1723) at org.hibernate.jdbc.BatchingBatcher.doExecuteBatch(BatchingBatcher.java:48) at org.hibernate.jdbc.AbstractBatcher.executeBatch(AbstractBatcher.java:246) ... 42 more 2011-04-29 16:33:46,296 scheduler_Worker-9 ERROR [persistence.hibernate.batch.AbstractBatchProcessor] Could not process class com.atlassian.crowd.model.membership.InternalMembership: com.atlassian.crowd.model.membership.InternalMembership@49b3a360[parentId=917506,childId=884740,membershipType=GROUP_USER,groupType=GROUP,parentName=testgroup,lowerParentName=testgroup,childName=SpaceUser,lowerChildName=spaceuser,directoryId=851969] org.hibernate.exception.GenericJDBCException: Could not execute JDBC batch update at org.hibernate.exception.SQLStateConverter.handledNonSpecificException(SQLStateConverter.java:103) at org.hibernate.exception.SQLStateConverter.convert(SQLStateConverter.java:91) at org.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:43) at org.hibernate.jdbc.AbstractBatcher.executeBatch(AbstractBatcher.java:253) at org.hibernate.engine.ActionQueue.executeActions(ActionQueue.java:237) at org.hibernate.engine.ActionQueue.executeActions(ActionQueue.java:141) at org.hibernate.event.def.AbstractFlushingEventListener.performExecutions(AbstractFlushingEventListener.java:298) at org.hibernate.event.def.DefaultFlushEventListener.onFlush(DefaultFlushEventListener.java:27) at org.hibernate.impl.SessionImpl.flush(SessionImpl.java:1000) at com.atlassian.crowd.util.persistence.hibernate.batch.hibernate3.Hibernate3BatchProcessor.flushSession(Hibernate3BatchProcessor.java:45) at com.atlassian.crowd.util.persistence.hibernate.batch.hibernate3.Hibernate3BatchProcessor.commitTransaction(Hibernate3BatchProcessor.java:122) at com.atlassian.crowd.util.persistence.hibernate.batch.hibernate3.Hibernate3BatchProcessor.afterProcessIndividual(Hibernate3BatchProcessor.java:106) at com.atlassian.crowd.util.persistence.hibernate.batch.AbstractBatchProcessor.processIndividual(AbstractBatchProcessor.java:187) at com.atlassian.crowd.util.persistence.hibernate.batch.AbstractBatchProcessor.processBatch(AbstractBatchProcessor.java:168) at com.atlassian.crowd.util.persistence.hibernate.batch.AbstractBatchProcessor.execute(AbstractBatchProcessor.java:132) at com.atlassian.crowd.dao.membership.MembershipDAOHibernate.addAll(MembershipDAOHibernate.java:303) at com.atlassian.crowd.dao.membership.MembershipDAOHibernate.addAllUsersToGroup(MembershipDAOHibernate.java:64) at com.atlassian.crowd.directory.CachingDirectory.addAllUsersToGroup(CachingDirectory.java:128) at com.atlassian.crowd.directory.DbCachingRemoteDirectoryCache.syncUserMembershipsForGroup(DbCachingRemoteDirectoryCache.java:697) at com.atlassian.crowd.directory.ldap.cache.UsnChangedCacheRefresher.synchroniseMembershipsForGroup(UsnChangedCacheRefresher.java:110) at com.atlassian.crowd.directory.ldap.cache.AbstractCacheRefresher.synchroniseMemberships(AbstractCacheRefresher.java:70) at com.atlassian.crowd.directory.ldap.cache.AbstractCacheRefresher.synchroniseAll(AbstractCacheRefresher.java:40) at com.atlassian.crowd.directory.ldap.cache.UsnChangedCacheRefresher.synchroniseAll(UsnChangedCacheRefresher.java:212) at com.atlassian.crowd.directory.DbCachingRemoteDirectory.synchroniseCache(DbCachingRemoteDirectory.java:645) at com.atlassian.crowd.manager.directory.DirectorySynchroniserHelperImpl.synchronise(DirectorySynchroniserHelperImpl.java:84) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:182) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:149) at com.atlassian.spring.interceptors.SpringProfilingInterceptor.invoke(SpringProfilingInterceptor.java:20) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171) at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:106) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171) at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:111) at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171) at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:204) at $Proxy6.synchronise(Unknown Source) at com.atlassian.crowd.manager.directory.DirectorySynchroniserImpl.synchronise(DirectorySynchroniserImpl.java:59) at com.atlassian.crowd.directory.DbCachingDirectoryPoller.pollChanges(DbCachingDirectoryPoller.java:50) at com.atlassian.crowd.manager.directory.monitor.poller.DirectoryPollerJobBean.executeInternal(DirectoryPollerJobBean.java:29) at org.springframework.scheduling.quartz.QuartzJobBean.execute(QuartzJobBean.java:86) at org.quartz.core.JobRunShell.run(JobRunShell.java:195) at org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:520) Caused by: java.sql.BatchUpdateException: Lock wait timeout exceeded; try restarting transaction at com.mysql.jdbc.PreparedStatement.executeBatchSerially(PreparedStatement.java:2007) at com.mysql.jdbc.PreparedStatement.executeBatch(PreparedStatement.java:1443) at com.mchange.v2.c3p0.impl.NewProxyPreparedStatement.executeBatch(NewProxyPreparedStatement.java:1723) at org.hibernate.jdbc.BatchingBatcher.doExecuteBatch(BatchingBatcher.java:48) at org.hibernate.jdbc.AbstractBatcher.executeBatch(AbstractBatcher.java:246) ... 42 more 2011-04-29 16:33:46,297 scheduler_Worker-9 INFO [persistence.hibernate.batch.AbstractBatchProcessor] processed batch [ 1 ] of [ 1 ] [ 100.0 % ] 2011-04-29 16:33:46,297 scheduler_Worker-9 WARN [atlassian.crowd.directory.DbCachingRemoteDirectoryCache] Could not add the following missing users to group [ testgroup ]: [SpaceUser] 2011-04-29 16:33:46,297 scheduler_Worker-9 INFO [atlassian.crowd.directory.DbCachingRemoteDirectoryCache] added [ 0 ] user members to [ testgroup ] in [ 104967ms ] 2011-04-29 16:33:46,300 scheduler_Worker-9 INFO [directory.ldap.cache.AbstractCacheRefresher] Migrated memberships for [0] of [3] groups 2011-04-29 16:33:46,300 scheduler_Worker-9 INFO [directory.ldap.cache.UsnChangedCacheRefresher] found [ 0 ] remote user-group memberships in [ 0ms ] 2011-04-29 16:33:46,300 scheduler_Worker-9 INFO [directory.ldap.cache.UsnChangedCacheRefresher] found [ 0 ] remote group-group memberships in [ 0ms ] 2011-04-29 16:33:46,305 scheduler_Worker-9 INFO [directory.ldap.cache.AbstractCacheRefresher] Migrated memberships for [1] of [3] groups 2011-04-29 16:33:46,305 scheduler_Worker-9 INFO [directory.ldap.cache.UsnChangedCacheRefresher] found [ 1 ] remote user-group memberships in [ 0ms ] 2011-04-29 16:33:46,305 scheduler_Worker-9 INFO [directory.ldap.cache.UsnChangedCacheRefresher] found [ 0 ] remote group-group memberships in [ 0ms ] 2011-04-29 16:33:46,311 scheduler_Worker-9 INFO [directory.ldap.cache.AbstractCacheRefresher] Migrated memberships for [2] of [3] groups 2011-04-29 16:33:46,312 scheduler_Worker-9 INFO [atlassian.crowd.directory.DbCachingRemoteDirectory] synchronisation complete in [ 107193ms ]
