Unable to clone from Bitbucket Server 4.0.2

After installing/upgrading to Bitbucket server 4.0.2 I am no longer able to Clone in SourceTree.

Steps to Duplicate:

1. Launch Sourcetree
2. On the Repository Browser click on remote and you will see a list of repositories on the Bitbucket server
3. Click clone
4. Note that there is a message that says "This is not a valid source path / URL" and the URL looks like: http://cdrummond@localhost/stash///git/TEST/test.git
5. Note that the Source URL has multiple problems:
6. # The port is missing. I connect to Stash on port 7990 and the port is not there
7. # The /scm is missing. In its place is just //
8. # There is an invalid /git in the URL
9. # The Project is displayed in all uppercase letters

You can also reproduce this by clicking on the Clone in SourceTree button that displays in Bitbucket Server on the repository clone page. In this case the URL is still malformed but it looks different, from the looks of the Source URL (which can not be edited) everything seems correct but you still get the "This is not a valid source path / URL" messager and you can not click the clone button.