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  1. Jira Data Center
  2. JRASERVER-77363

Package Scanner found duplicates for atlassian packages on fresh install

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Details

    • Bug
    • Resolution: Unresolved
    • Low
    • None
    • 9.12.2
    • Installation

    Description

      Issue Summary

      Even on a fresh install of Jira 9.12.2 you will get WARN log messages for Duplicate Packages.

      This is reproducible on Data Center: Yes

      Steps to Reproduce

      1. Fresh install of Jira 9.12.2.
        1. Upgrade into it will also show the WARNs.

      Expected Results

      Don't show any warning messages about these duplicate packages.

      Actual Results

      The below warnings is thrown in the atlassian-jira.log file:

      2024-01-25 09:44:24,432-0300 JIRA-Bootstrap WARN      [o.twdata.pkgscanner.ExportPackageListBuilder] Package Scanner found duplicates for package 'com.atlassian.secrets.tomcat.protocol' with different versions. Files: password-cipher-base-1.4.0.jar and atlassian-secrets-store-3.2.2.jar
      '/Users/adminuser/jira/atlassian-jira-software-9.12.2-standalone/lib/password-cipher-base-1.4.0.jar'
      '/Users/adminuser/jira/atlassian-jira-software-9.12.2-standalone/lib/atlassian-secrets-store-3.2.2.jar'
2024-01-25 09:44:24,433-0300 JIRA-Bootstrap WARN      [o.twdata.pkgscanner.ExportPackageListBuilder] Package Scanner found duplicates for package 'com.atlassian.secrets.tomcat.utils' with different versions. Files: password-cipher-base-1.4.0.jar and atlassian-secrets-store-3.2.2.jar
      '/Users/adminuser/jira/atlassian-jira-software-9.12.2-standalone/lib/password-cipher-base-1.4.0.jar'
      '/Users/adminuser/jira/atlassian-jira-software-9.12.2-standalone/lib/atlassian-secrets-store-3.2.2.jar'
2024-01-25 09:44:24,433-0300 JIRA-Bootstrap WARN      [o.twdata.pkgscanner.ExportPackageListBuilder] Package Scanner found duplicates for package 'com.atlassian.secrets.tomcat.cipher' with different versions. Files: password-cipher-base-1.4.0.jar and atlassian-secrets-store-3.2.2.jar
      '/Users/adminuser/jira/atlassian-jira-software-9.12.2-standalone/lib/password-cipher-base-1.4.0.jar'
      '/Users/adminuser/jira/atlassian-jira-software-9.12.2-standalone/lib/atlassian-secrets-store-3.2.2.jar'
2024-01-25 09:44:24,433-0300 JIRA-Bootstrap WARN      [o.twdata.pkgscanner.ExportPackageListBuilder] Package Scanner found duplicates for package 'com.atlassian.db.config.password' with different versions. Files: atlassian-secrets-api-3.2.2.jar and password-cipher-base-1.4.0.jar
      '/Users/adminuser/jira/atlassian-jira-software-9.12.2-standalone/lib/atlassian-secrets-api-3.2.2.jar'
      '/Users/adminuser/jira/atlassian-jira-software-9.12.2-standalone/lib/password-cipher-base-1.4.0.jar'
2024-01-25 09:44:24,434-0300 JIRA-Bootstrap WARN      [o.twdata.pkgscanner.ExportPackageListBuilder] Package Scanner found duplicates for package 'com.atlassian.db.config.password' with different versions. Files: password-cipher-base-1.4.0.jar and atlassian-secrets-api-3.2.2.jar
      '/Users/adminuser/jira/atlassian-jira-software-9.12.2-standalone/lib/password-cipher-base-1.4.0.jar'
      '/Users/adminuser/jira/atlassian-jira-software-9.12.2-standalone/lib/atlassian-secrets-api-3.2.2.jar'
2024-01-25 09:44:24,434-0300 JIRA-Bootstrap WARN      [o.twdata.pkgscanner.ExportPackageListBuilder] Package Scanner found duplicates for package 'com.atlassian.secrets.tomcat.protocol' with different versions. Files: atlassian-secrets-store-3.2.2.jar and password-cipher-base-1.4.0.jar
      '/Users/adminuser/jira/atlassian-jira-software-9.12.2-standalone/lib/atlassian-secrets-store-3.2.2.jar'
      '/Users/adminuser/jira/atlassian-jira-software-9.12.2-standalone/lib/password-cipher-base-1.4.0.jar'
2024-01-25 09:44:24,434-0300 JIRA-Bootstrap WARN      [o.twdata.pkgscanner.ExportPackageListBuilder] Package Scanner found duplicates for package 'com.atlassian.secrets.tomcat.utils' with different versions. Files: atlassian-secrets-store-3.2.2.jar and password-cipher-base-1.4.0.jar
      '/Users/adminuser/jira/atlassian-jira-software-9.12.2-standalone/lib/atlassian-secrets-store-3.2.2.jar'
      '/Users/adminuser/jira/atlassian-jira-software-9.12.2-standalone/lib/password-cipher-base-1.4.0.jar'
2024-01-25 09:44:24,434-0300 JIRA-Bootstrap WARN      [o.twdata.pkgscanner.ExportPackageListBuilder] Package Scanner found duplicates for package 'com.atlassian.secrets.tomcat.cipher' with different versions. Files: atlassian-secrets-store-3.2.2.jar and password-cipher-base-1.4.0.jar
      '/Users/adminuser/jira/atlassian-jira-software-9.12.2-standalone/lib/atlassian-secrets-store-3.2.2.jar'
      '/Users/adminuser/jira/atlassian-jira-software-9.12.2-standalone/lib/password-cipher-base-1.4.0.jar'
2024-01-25 09:44:24,435-0300 JIRA-Bootstrap WARN      [o.twdata.pkgscanner.ExportPackageListBuilder] Package Scanner found duplicates for package 'com.atlassian.secrets.tomcat.protocol' with different versions. Files: password-cipher-base-1.4.0.jar and atlassian-secrets-store-3.2.2.jar
      '/Users/adminuser/jira/atlassian-jira-software-9.12.2-standalone/atlassian-jira/WEB-INF/lib/password-cipher-base-1.4.0.jar'
      '/Users/adminuser/jira/atlassian-jira-software-9.12.2-standalone/atlassian-jira/WEB-INF/lib/atlassian-secrets-store-3.2.2.jar'
2024-01-25 09:44:24,435-0300 JIRA-Bootstrap WARN      [o.twdata.pkgscanner.ExportPackageListBuilder] Package Scanner found duplicates for package 'com.atlassian.secrets.tomcat.utils' with different versions. Files: password-cipher-base-1.4.0.jar and atlassian-secrets-store-3.2.2.jar
      '/Users/adminuser/jira/atlassian-jira-software-9.12.2-standalone/atlassian-jira/WEB-INF/lib/password-cipher-base-1.4.0.jar'
      '/Users/adminuser/jira/atlassian-jira-software-9.12.2-standalone/atlassian-jira/WEB-INF/lib/atlassian-secrets-store-3.2.2.jar'
2024-01-25 09:44:24,435-0300 JIRA-Bootstrap WARN      [o.twdata.pkgscanner.ExportPackageListBuilder] Package Scanner found duplicates for package 'com.atlassian.secrets.tomcat.cipher' with different versions. Files: password-cipher-base-1.4.0.jar and atlassian-secrets-store-3.2.2.jar
      '/Users/adminuser/jira/atlassian-jira-software-9.12.2-standalone/atlassian-jira/WEB-INF/lib/password-cipher-base-1.4.0.jar'
      '/Users/adminuser/jira/atlassian-jira-software-9.12.2-standalone/atlassian-jira/WEB-INF/lib/atlassian-secrets-store-3.2.2.jar'
2024-01-25 09:44:24,435-0300 JIRA-Bootstrap WARN      [o.twdata.pkgscanner.ExportPackageListBuilder] Package Scanner found duplicates for package 'javax.activation' with different versions. Files: jakarta.activation-1.2.1.jar and jakarta.activation-api-1.2.2.jar
      '/Users/adminuser/jira/atlassian-jira-software-9.12.2-standalone/atlassian-jira/WEB-INF/lib/jakarta.activation-1.2.1.jar'
      '/Users/adminuser/jira/atlassian-jira-software-9.12.2-standalone/atlassian-jira/WEB-INF/lib/jakarta.activation-api-1.2.2.jar'
2024-01-25 09:44:24,436-0300 JIRA-Bootstrap WARN      [o.twdata.pkgscanner.ExportPackageListBuilder] Package Scanner found duplicates for package 'javax.activation' with different versions. Files: javax.activation-api-1.2.0.jar and jakarta.activation-1.2.1.jar
      '/Users/adminuser/jira/atlassian-jira-software-9.12.2-standalone/atlassian-jira/WEB-INF/lib/javax.activation-api-1.2.0.jar'
      '/Users/adminuser/jira/atlassian-jira-software-9.12.2-standalone/atlassian-jira/WEB-INF/lib/jakarta.activation-1.2.1.jar'
2024-01-25 09:44:24,436-0300 JIRA-Bootstrap WARN      [o.twdata.pkgscanner.ExportPackageListBuilder] Package Scanner found duplicates for package 'javax.activation' with different versions. Files: activation-1.1.1.jar and javax.activation-api-1.2.0.jar
      '/Users/adminuser/jira/atlassian-jira-software-9.12.2-standalone/atlassian-jira/WEB-INF/lib/activation-1.1.1.jar'
      '/Users/adminuser/jira/atlassian-jira-software-9.12.2-standalone/atlassian-jira/WEB-INF/lib/javax.activation-api-1.2.0.jar'
2024-01-25 09:44:24,436-0300 JIRA-Bootstrap WARN      [o.twdata.pkgscanner.ExportPackageListBuilder] Package Scanner found duplicates for package 'com.atlassian.db.config.password' with different versions. Files: atlassian-secrets-api-3.2.2.jar and password-cipher-api-1.4.0.jar
      '/Users/adminuser/jira/atlassian-jira-software-9.12.2-standalone/atlassian-jira/WEB-INF/lib/atlassian-secrets-api-3.2.2.jar'
      '/Users/adminuser/jira/atlassian-jira-software-9.12.2-standalone/atlassian-jira/WEB-INF/lib/password-cipher-api-1.4.0.jar'
2024-01-25 09:44:24,436-0300 JIRA-Bootstrap WARN      [o.twdata.pkgscanner.ExportPackageListBuilder] Package Scanner found duplicates for package 'javax.xml.bind.helpers' with different versions. Files: jakarta.xml.bind-api-2.3.3.jar and jaxb-api-2.3.1.jar
      '/Users/adminuser/jira/atlassian-jira-software-9.12.2-standalone/atlassian-jira/WEB-INF/lib/jakarta.xml.bind-api-2.3.3.jar'
      '/Users/adminuser/jira/atlassian-jira-software-9.12.2-standalone/atlassian-jira/WEB-INF/lib/jaxb-api-2.3.1.jar'
2024-01-25 09:44:24,437-0300 JIRA-Bootstrap WARN      [o.twdata.pkgscanner.ExportPackageListBuilder] Package Scanner found duplicates for package 'javax.xml.bind.annotation.adapters' with different versions. Files: jakarta.xml.bind-api-2.3.3.jar and jaxb-api-2.3.1.jar
      '/Users/adminuser/jira/atlassian-jira-software-9.12.2-standalone/atlassian-jira/WEB-INF/lib/jakarta.xml.bind-api-2.3.3.jar'
      '/Users/adminuser/jira/atlassian-jira-software-9.12.2-standalone/atlassian-jira/WEB-INF/lib/jaxb-api-2.3.1.jar'
2024-01-25 09:44:24,437-0300 JIRA-Bootstrap WARN      [o.twdata.pkgscanner.ExportPackageListBuilder] Package Scanner found duplicates for package 'javax.xml.bind.annotation' with different versions. Files: jakarta.xml.bind-api-2.3.3.jar and jaxb-api-2.3.1.jar
      '/Users/adminuser/jira/atlassian-jira-software-9.12.2-standalone/atlassian-jira/WEB-INF/lib/jakarta.xml.bind-api-2.3.3.jar'
      '/Users/adminuser/jira/atlassian-jira-software-9.12.2-standalone/atlassian-jira/WEB-INF/lib/jaxb-api-2.3.1.jar'
2024-01-25 09:44:24,437-0300 JIRA-Bootstrap WARN      [o.twdata.pkgscanner.ExportPackageListBuilder] Package Scanner found duplicates for package 'javax.xml.bind.util' with different versions. Files: jakarta.xml.bind-api-2.3.3.jar and jaxb-api-2.3.1.jar
      '/Users/adminuser/jira/atlassian-jira-software-9.12.2-standalone/atlassian-jira/WEB-INF/lib/jakarta.xml.bind-api-2.3.3.jar'
      '/Users/adminuser/jira/atlassian-jira-software-9.12.2-standalone/atlassian-jira/WEB-INF/lib/jaxb-api-2.3.1.jar'
2024-01-25 09:44:24,437-0300 JIRA-Bootstrap WARN      [o.twdata.pkgscanner.ExportPackageListBuilder] Package Scanner found duplicates for package 'javax.xml.bind.attachment' with different versions. Files: jakarta.xml.bind-api-2.3.3.jar and jaxb-api-2.3.1.jar
      '/Users/adminuser/jira/atlassian-jira-software-9.12.2-standalone/atlassian-jira/WEB-INF/lib/jakarta.xml.bind-api-2.3.3.jar'
      '/Users/adminuser/jira/atlassian-jira-software-9.12.2-standalone/atlassian-jira/WEB-INF/lib/jaxb-api-2.3.1.jar'
2024-01-25 09:44:24,437-0300 JIRA-Bootstrap WARN      [o.twdata.pkgscanner.ExportPackageListBuilder] Package Scanner found duplicates for package 'javax.xml.bind' with different versions. Files: jakarta.xml.bind-api-2.3.3.jar and jaxb-api-2.3.1.jar
      '/Users/adminuser/jira/atlassian-jira-software-9.12.2-standalone/atlassian-jira/WEB-INF/lib/jakarta.xml.bind-api-2.3.3.jar'
      '/Users/adminuser/jira/atlassian-jira-software-9.12.2-standalone/atlassian-jira/WEB-INF/lib/jaxb-api-2.3.1.jar

      These are the file pairs that contain duplicate implementations of the same packages:

      ➜  ~ grep "Package Scanner found duplicates for package" x | cut -d':' -f4 | sort -u
 activation-1.1.1.jar and javax.activation-api-1.2.0.jar
 atlassian-secrets-api-3.2.2.jar and password-cipher-api-1.4.0.jar
 atlassian-secrets-api-3.2.2.jar and password-cipher-base-1.4.0.jar
 atlassian-secrets-store-3.2.2.jar and password-cipher-base-1.4.0.jar
 jakarta.activation-1.2.1.jar and jakarta.activation-api-1.2.2.jar
 jakarta.xml.bind-api-2.3.3.jar and jaxb-api-2.3.1.jar
 javax.activation-api-1.2.0.jar and jakarta.activation-1.2.1.jar
 password-cipher-base-1.4.0.jar and atlassian-secrets-api-3.2.2.jar
 password-cipher-base-1.4.0.jar and atlassian-secrets-store-3.2.2.jar

      Another bug report was opened for different packages on previous version. Here it is for reference:

      Package Scanner found duplicates for atlassian packages - JRASERVER-75078

      Workaround

      Currently, there is no known workaround for this behavior. A workaround will be added here when available. For now, you can just ignore these warnings.

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          relates to

          Bug - A problem which impairs or prevents the functions of the product. JRASERVER-75078 Package Scanner found duplicates for atlassian packages

          • Low - Low priority issues
          • Long Term Backlog
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              Unassigned Unassigned
              a3c7c2a06f95 Filipi Lima
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              Dates

                Created:
                Updated: