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Type: Bug
Resolution: Answered
Priority: Low
Fix Version/s: N/A
Affects Version/s: 4.5.0, 4.6.0, 4.7.0
Component/s: Server administration
Labels:
None

Symptom Severity:
Severity 3 - Minor
Bug Fix Policy:
View Atlassian Server bug fix policy

Issue Summary

Restore from a backup fails with the "org.hibernate.PropertyValueException: not-null property references a null or transient value: com.cenqua.crucible.model.Project.permissionScheme" exception.

INFO  - Starting plugin system...
ERROR - No default permission scheme exists
WARN  - Exception encountered during context initialization - cancelling refresh attempt
org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'activityItemDataService' defined in URL [jar:file:/home/ubuntu/fecru-4.7.1/fisheye.jar!/com/atlassian/fecru/activityitem/logitem/LogItemActivityItemDataService.class]: Unsatisfied dependency expressed through constructor argument with index 0 of type [com.atlassian.crucible.spi.services.ReviewService]: : Error creating bean with name 'reviewService' defined in URL [jar:file:/home/ubuntu/fecru-4.7.1/fisheye.jar!/com/atlassian/crucible/spi/impl/DefaultReviewService.class]: Unsatisfied dependency expressed through constructor argument with index 2 of type [com.cenqua.crucible.model.managers.ProjectManager]: : Error creating bean with name 'projectManager': Invocation of init method failed; nested exception is org.hibernate.PropertyValueException: not-null property references a null or transient value: com.cenqua.crucible.model.Project.permissionScheme; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'projectManager': Invocation of init method failed; nested exception is org.hibernate.PropertyValueException: not-null property references a null or transient value: com.cenqua.crucible.model.Project.permissionScheme; nested exception is org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'reviewService' defined in URL [jar:file:/home/ubuntu/fecru-4.7.1/fisheye.jar!/com/atlassian/crucible/spi/impl/DefaultReviewService.class]: Unsatisfied dependency expressed through constructor argument with index 2 of type [com.cenqua.crucible.model.managers.ProjectManager]: : Error creating bean with name 'projectManager': Invocation of init method failed; nested exception is org.hibernate.PropertyValueException: not-null property references a null or transient value: com.cenqua.crucible.model.Project.permissionScheme; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'projectManager': Invocation of init method failed; nested exception is org.hibernate.PropertyValueException: not-null property references a null or transient value: com.cenqua.crucible.model.Project.permissionScheme
    Related cause: org.springframework.beans.factory.BeanCurrentlyInCreationException: Error creating bean with name 'backup': Requested bean is currently in creation: Is there an unresolvable circular reference?
	at org.springframework.beans.factory.support.ConstructorResolver.createArgumentArray(ConstructorResolver.java:747) [spring-beans-4.0.9.RELEASE.jar:4.0.9.RELEASE]
	at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:185) [spring-beans-4.0.9.RELEASE.jar:4.0.9.RELEASE]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:1115) [spring-beans-4.0.9.RELEASE.jar:4.0.9.RELEASE]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:1018) [spring-beans-4.0.9.RELEASE.jar:4.0.9.RELEASE]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:504) [spring-beans-4.0.9.RELEASE.jar:4.0.9.RELEASE]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:475) [spring-beans-4.0.9.RELEASE.jar:4.0.9.RELEASE]
	at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:302) [spring-beans-4.0.9.RELEASE.jar:4.0.9.RELEASE]
	at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:229) [spring-beans-4.0.9.RELEASE.jar:4.0.9.RELEASE]
	at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:298) [spring-beans-4.0.9.RELEASE.jar:4.0.9.RELEASE]
	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:193) [spring-beans-4.0.9.RELEASE.jar:4.0.9.RELEASE]
	at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:706) [spring-beans-4.0.9.RELEASE.jar:4.0.9.RELEASE]
	at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:762) [spring-context-4.0.9.RELEASE.jar:4.0.9.RELEASE]
	at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:482) [spring-context-4.0.9.RELEASE.jar:4.0.9.RELEASE]
	at org.springframework.context.support.FileSystemXmlApplicationContext.<init>(FileSystemXmlApplicationContext.java:140) [spring-context-4.0.9.RELEASE.jar:4.0.9.RELEASE]
	at org.springframework.context.support.FileSystemXmlApplicationContext.<init>(FileSystemXmlApplicationContext.java:84) [spring-context-4.0.9.RELEASE.jar:4.0.9.RELEASE]
	at com.cenqua.fisheye.ctl.Restore$RestoreApplicationContext.<init>(Restore.java:363) [fisheye.jar:?]
	at com.cenqua.fisheye.ctl.Restore$RestoreApplicationContext.<init>(Restore.java:360) [fisheye.jar:?]
	at com.cenqua.fisheye.ctl.Restore.createApplicationContext(Restore.java:351) [fisheye.jar:?]
	at com.cenqua.fisheye.ctl.Restore.run(Restore.java:158) [fisheye.jar:?]
	at com.cenqua.fisheye.ctl.Restore.main(Restore.java:261) [fisheye.jar:?]
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) [?:1.8.0_212]
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) [?:1.8.0_212]
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) [?:1.8.0_212]
	at java.lang.reflect.Method.invoke(Method.java:498) [?:1.8.0_212]
	at com.cenqua.fisheye.FishEyeCtl.mainImpl(FishEyeCtl.java:101) [fisheyeboot.jar:?]
	at com.cenqua.fisheye.FishEyeCtl.main(FishEyeCtl.java:44) [fisheyeboot.jar:?]

Caused by: org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'reviewService' defined in URL [jar:file:/home/ubuntu/fecru-4.7.1/fisheye.jar!/com/atlassian/crucible/spi/impl/DefaultReviewService.class]: Unsatisfied dependency expressed through constructor argument with index 2 of type [com.cenqua.crucible.model.managers.ProjectManager]: : Error creating bean with name 'projectManager': Invocation of init method failed; nested exception is org.hibernate.PropertyValueException: not-null property references a null or transient value: com.cenqua.crucible.model.Project.permissionScheme; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'projectManager': Invocation of init method failed; nested exception is org.hibernate.PropertyValueException: not-null property references a null or transient value: com.cenqua.crucible.model.Project.permissionScheme
	at org.springframework.beans.factory.support.ConstructorResolver.createArgumentArray(ConstructorResolver.java:747) [spring-beans-4.0.9.RELEASE.jar:4.0.9.RELEASE]
	at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:185) [spring-beans-4.0.9.RELEASE.jar:4.0.9.RELEASE]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:1115) [spring-beans-4.0.9.RELEASE.jar:4.0.9.RELEASE]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:1018) [spring-beans-4.0.9.RELEASE.jar:4.0.9.RELEASE]
	at 

...

Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'projectManager': Invocation of init method failed; nested exception is org.hibernate.PropertyValueException: not-null property references a null or transient value: com.cenqua.crucible.model.Project.permissionScheme
	at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.postProcessBeforeInitialization(InitDestroyAnnotationBeanPostProcessor.java:136) [spring-beans-4.0.9.RELEASE.jar:4.0.9.RELEASE]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyBeanPostProcessorsBeforeInitialization(AbstractAutowireCapableBeanFactory.java:407) [spring-beans-4.0.9.RELEASE.jar:4.0.9.RELEASE]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1546) [spring-beans-4.0.9.RELEASE.jar:4.0.9.RELEASE]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:539) [spring-beans-4.0.9.RELEASE.jar:4.0.9.RELEASE]
	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:475) [spring-beans-4.0.9.RELEASE.jar:4.0.9.RELEASE]

...

Caused by: org.hibernate.PropertyValueException: not-null property references a null or transient value: com.cenqua.crucible.model.Project.permissionScheme
	at org.hibernate.engine.internal.Nullability.checkNullability(Nullability.java:103) [hibernate-core-4.2.13.Final.jar:4.2.13.Final]
	at org.hibernate.action.internal.AbstractEntityInsertAction.nullifyTransientReferencesIfNotAlready(AbstractEntityInsertAction.java:132) [hibernate-core-4.2.13.Final.jar:4.2.13.Final]
	at org.hibernate.action.internal.AbstractEntityInsertAction.makeEntityManaged(AbstractEntityInsertAction.java:141) [hibernate-core-4.2.13.Final.jar:4.2.13.Final]
	at org.hibernate.engine.spi.ActionQueue.addResolvedEntityInsertAction(ActionQueue.java:235) [hibernate-core-4.2.13.Final.jar:4.2.13.Final]
	at org.hibernate.engine.spi.ActionQueue.addInsertAction(ActionQueue.java:209) [hibernate-core-4.2.13.Final.jar:4.2.13.Final]
	at org.hibernate.engine.spi.ActionQueue.addAction(ActionQueue.java:152) [hibernate-core-4.2.13.Final.jar:4.2.13.Final]

...

ERROR: problem running command
java.lang.reflect.InvocationTargetException
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at com.cenqua.fisheye.FishEyeCtl.mainImpl(FishEyeCtl.java:101)
	at com.cenqua.fisheye.FishEyeCtl.main(FishEyeCtl.java:44)
Caused by: org.springframework.context.ApplicationContextException: Application Context not initialised.
	at com.cenqua.fisheye.config.SpringContext.getApplicationContext(SpringContext.java:51)
	at com.cenqua.fisheye.config.SpringContext.getComponentByClass(SpringContext.java:90)
	at com.cenqua.fisheye.config.RootConfig.getRepositoryManager(RootConfig.java:601)
	at com.cenqua.fisheye.config.RootConfig.fullShutdown(RootConfig.java:1288)
	at com.cenqua.fisheye.ctl.Restore.destroyApplicationContext(Restore.java:356)
	at com.cenqua.fisheye.ctl.Restore.run(Restore.java:198)
	at com.cenqua.fisheye.ctl.Restore.main(Restore.java:261)
	... 6 more

Steps to Reproduce

1. Create a backup file.

2. Perform an import which will fail in the middle of the operation (e.g. a corrupted backup file).

Creating table definitions...
INFO  - Creating DB schema version 107 using /home/ubuntu/fecru-4.7.1/sql/SQLSERVER2008/schema/tables_107.sql
1 rows written, 0 tables completed.
3 rows written, 1 tables completed.
7 rows written, 3 tables completed.
7 rows written, 4 tables completed.
8 rows written, 4 tables completed.
14 rows written, 5 tables completed.
INFO  - Shutting down cross-repo lucene index
INFO  - Shutdown in progress...
INFO  - Shutting down DB.      <<<<<<<<  
INFO  - *** application context closed ***
com.atlassian.crucible.migration.ParseException
	at com.atlassian.crucible.migration.xml.StAXStreamReader$1.getContentAsString(StAXStreamReader.java:138)
	at com.atlassian.crucible.migration.item.DBImporter$BaseInserter.setValue(DBImporter.java:442)
	at com.atlassian.crucible.migration.item.DBImporter.importTable(DBImporter.java:180)
	at com.atlassian.crucible.migration.item.DBImporter.importData(DBImporter.java:134)
	at com.atlassian.crucible.migration.item.SQLBackup.restore(SQLBackup.java:191)
	at com.atlassian.crucible.migration.item.SQLBackup$1.restore(SQLBackup.java:172)
	at com.cenqua.fisheye.ctl.Restore.run(Restore.java:187)
	at com.cenqua.fisheye.ctl.Restore.main(Restore.java:261)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at com.cenqua.fisheye.FishEyeCtl.mainImpl(FishEyeCtl.java:101)
	at com.cenqua.fisheye.FishEyeCtl.main(FishEyeCtl.java:44)
Caused by: com.ctc.wstx.exc.WstxParsingException: Illegal character entity: expansion character (code 0xd83c) not a valid XML character
 at [row,col {unknown-source}]: [1,6298]
	at com.ctc.wstx.sr.StreamScanner.constructWfcException(StreamScanner.java:630)
	at com.ctc.wstx.sr.StreamScanner.throwParseError(StreamScanner.java:461)
	at com.ctc.wstx.sr.StreamScanner.reportIllegalChar(StreamScanner.java:2400)
	at com.ctc.wstx.sr.StreamScanner.checkAndExpandChar(StreamScanner.java:2320)
	at com.ctc.wstx.sr.StreamScanner.resolveCharEnt(StreamScanner.java:2302)
	at com.ctc.wstx.sr.StreamScanner.fullyResolveEntity(StreamScanner.java:1493)
	at com.ctc.wstx.sr.BasicStreamReader.nextFromTree(BasicStreamReader.java:2757)
	at com.ctc.wstx.sr.BasicStreamReader.next(BasicStreamReader.java:1019)
	at com.ctc.wstx.sr.BasicStreamReader.getElementText(BasicStreamReader.java:669)
	at com.atlassian.crucible.migration.xml.StAXStreamReader$1.getContentAsString(StAXStreamReader.java:135)
	... 13 more
Restore failed. This may leave your target FISHEYE_INST directory (/home/ubuntu/fecru-4.7.1) in an inconsistent state.

3. Perform import again

INFO  - Starting database...
INFO  - BoneCP - tracking statements enabled for pool [mainPool]
INFO  - BoneCP - tracking statements enabled for pool [retriablePool]
INFO  - Database started.
INFO  - Using synchronous global permission cache reload policy
INFO  - Starting plugin system...
ERROR - No default permission scheme exists       <<<<<<<<   
WARN  - Exception encountered during context initialization - cancelling refresh attempt
org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'activityItemDataService' defined in URL [jar:file:/home/ubuntu/mp/fecru-4.7.1-orig/fisheye.jar!/com/atlassian/fecru/activityitem/logitem/LogItemActivityItemDataService.class]: Unsatisfied dependency expressed through constructor argument with index 0 of type [com.atlassian.crucible.spi.services.ReviewService]: : Error creating bean with name 'reviewService' defined in URL [jar:file:/home/ubuntu/mp/fecru-4.7.1-orig/fisheye.jar!/com/atlassian/crucible/spi/impl/DefaultReviewService.class]: Unsatisfied dependency expressed through constructor argument with index 2 of type [com.cenqua.crucible.model.managers.ProjectManager]: : Error creating bean with name 'projectManager': Invocation of init method failed; nested exception is org.hibernate.PropertyValueException: not-null property references a null or transient value: com.cenqua.crucible.model.Project.permissionScheme; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'projectManager': Invocation of init method failed; nested exception is org.hibernate.PropertyValueException: not-null property references a null or transient value: com.cenqua.crucible.model.Project.permissionScheme; nested exception is org.springframework.beans.factory.UnsatisfiedDependencyException: Error creating bean with name 'reviewService' defined in URL [jar:file:/home/ubuntu/mp/fecru-4.7.1-orig/fisheye.jar!/com/atlassian/crucible/spi/impl/DefaultReviewService.class]: Unsatisfied dependency expressed through constructor argument with index 2 of type [com.cenqua.crucible.model.managers.ProjectManager]: : Error creating bean with name 'projectManager': Invocation of init method failed; nested exception is org.hibernate.PropertyValueException: not-null property references a null or transient value: com.cenqua.crucible.model.Project.permissionScheme; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'projectManager': Invocation of init method failed; nested exception is org.hibernate.PropertyValueException: not-null property references a null or transient value: com.cenqua.crucible.model.Project.permissionScheme

Expected Results

n/a

Actual Results

Fisheye is unable to start due to Spring bean initialisation error. The below exception is thrown in the log file:

org.hibernate.PropertyValueException: not-null property references a null or transient value: com.cenqua.crucible.model.Project.permissionScheme

Notes

This is caused by an inconsistent database state. Fisheye/Crucible expects a permission scheme, which is normally being created during setup. Because of the fact that backup import failed in the middle, this data is missing in the database.

Workaround

Use an empty database to restore from the backup.

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