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Details

Type: Bug
Resolution: Fixed
Priority: Low
Fix Version/s: 5.4.0
Affects Version/s: 4.14.5, 5.0.2
Component/s: Repository - Branch Permissions
Labels:
None

Symptom Severity:
Severity 3 - Minor
UIS:
4
Bug Fix Policy:
View Atlassian Server bug fix policy

Description

Summary

A 500 error is returned when accessing the Branch Permissions page of a repository under certain conditions if a branch with restrictions has been deleted.

Steps to Reproduce

Create a branch named development/test
Create a Branch Permission for development/test
Delete the development/test branch
1. Navigating to the Branch Permission page works as expected here and shows that the branch was deleted
Create a branch named development
Navigate to the Branch Permissions page of the repository

Expected Results

Branch Permission page shows the branch permission for development/test, but has the Deleted lozenge

Actual Results

A 500 error us returned and the below exception is thrown in the atlassian-bitbucket.log file:

2017-06-05 18:44:27,686 ERROR [http-nio-7990-exec-1] admin @JAGBIAx1124x13343x0 1yv5khj 10.0.2.2,192.168.5.2 "GET /rest/branch-permissions/2.0/projects/TB/repos/scratch/restrictions HTTP/1.1" c.a.s.i.r.e.DefaultUnhandledExceptionMapperHelper Unhandled exception while processing REST request: "GET /rest/branch-permissions/2.0/projects/TB/repos/scratch/restrictions HTTP/1.1"
com.atlassian.stash.internal.scm.git.ref.InvalidRefException: Could not read loose ref
        at com.atlassian.stash.internal.scm.git.ref.LooseRefDb.retryingRead(LooseRefDb.java:156)
        at com.atlassian.stash.internal.scm.git.ref.LooseRefDb.internalResolve(LooseRefDb.java:240)
        at com.atlassian.stash.internal.scm.git.ref.LooseRefDb.lambda$internalResolve$10(LooseRefDb.java:264)
        at java.util.HashMap$KeySet.forEach(HashMap.java:932)
        at com.atlassian.stash.internal.scm.git.ref.LooseRefDb.internalResolve(LooseRefDb.java:262)
        at com.atlassian.stash.internal.scm.git.ref.LooseRefDb.resolve(LooseRefDb.java:123)
        at com.atlassian.stash.internal.scm.git.ref.CompositeGitRefDb.resolve(CompositeGitRefDb.java:109)
        at com.atlassian.stash.internal.scm.git.command.refdb.ResolveGitRefDbCommand.internalCall(ResolveGitRefDbCommand.java:55)
        at com.atlassian.stash.internal.scm.git.command.refdb.ResolveGitRefDbCommand.internalCall(ResolveGitRefDbCommand.java:23)
        at com.atlassian.stash.internal.scm.git.command.refdb.AbstractGitRefDbCommand.call(AbstractGitRefDbCommand.java:50)
        at com.atlassian.stash.internal.scm.git.command.refdb.ResolveGitRefDbCommand.call(ResolveGitRefDbCommand.java:44)
        at com.atlassian.stash.internal.scm.git.command.refdb.ResolveGitRefDbCommand.call(ResolveGitRefDbCommand.java:23)
        at com.atlassian.stash.internal.scm.git.command.TransformedGitCommand.call(TransformedGitCommand.java:45)
        at com.atlassian.stash.internal.repository.DefaultRefService.resolveRef(DefaultRefService.java:257)
        at com.atlassian.plugin.util.ContextClassLoaderSettingInvocationHandler.invoke(ContextClassLoaderSettingInvocationHandler.java:26)
        at org.eclipse.gemini.blueprint.service.importer.support.internal.aop.ServiceInvoker.doInvoke(ServiceInvoker.java:56)
        at org.eclipse.gemini.blueprint.service.importer.support.internal.aop.ServiceInvoker.invoke(ServiceInvoker.java:60)
        at org.eclipse.gemini.blueprint.service.util.internal.aop.ServiceTCCLInterceptor.invokeUnprivileged(ServiceTCCLInterceptor.java:70)
        at org.eclipse.gemini.blueprint.service.util.internal.aop.ServiceTCCLInterceptor.invoke(ServiceTCCLInterceptor.java:53)
        at org.eclipse.gemini.blueprint.service.importer.support.LocalBundleContextAdvice.invoke(LocalBundleContextAdvice.java:57)
        at com.atlassian.stash.internal.repository.ref.restriction.provider.BranchMatcherProvider$1.lambda$visit$1(BranchMatcherProvider.java:55)
        at com.google.common.base.Suppliers$MemoizingSupplier.get(Suppliers.java:125)
        at com.atlassian.stash.internal.repository.ref.restriction.provider.BranchMatcher.getDisplayId(BranchMatcher.java:39)
        at com.atlassian.stash.internal.repository.ref.restriction.rest.RestRefMatcher.<init>(RestRefMatcher.java:28)
        at com.atlassian.stash.internal.repository.ref.restriction.rest.RestRefRestriction.<init>(RestRefRestriction.java:46)
        at com.google.common.collect.Iterators$8.transform(Iterators.java:799)
        at com.google.common.collect.TransformedIterator.next(TransformedIterator.java:48)
        at com.google.common.collect.ImmutableList.copyOf(ImmutableList.java:271)
        at com.google.common.collect.ImmutableList.copyOf(ImmutableList.java:226)
        at com.atlassian.bitbucket.rest.util.RestPage.<init>(RestPage.java:35)
        at com.atlassian.bitbucket.rest.util.RestPage.<init>(RestPage.java:43)
        at com.atlassian.bitbucket.rest.util.RestPage.<init>(RestPage.java:28)
        at com.atlassian.stash.internal.repository.ref.restriction.rest.AbstractRefRestrictionResource.getRestrictions(AbstractRefRestrictionResource.java:331)
        at com.atlassian.applinks.core.rest.context.ContextFilter.doFilter(ContextFilter.java:24)
        at com.atlassian.applinks.core.rest.context.ContextFilter.doFilter(ContextFilter.java:24)
        at com.atlassian.applinks.core.rest.context.ContextFilter.doFilter(ContextFilter.java:24)
        at com.atlassian.applinks.core.rest.context.ContextFilter.doFilter(ContextFilter.java:24)
        at com.atlassian.applinks.core.rest.context.ContextFilter.doFilter(ContextFilter.java:24)
        at com.atlassian.analytics.client.filter.UniversalAnalyticsFilter.doFilter(UniversalAnalyticsFilter.java:92)
        at com.atlassian.analytics.client.filter.AbstractHttpFilter.doFilter(AbstractHttpFilter.java:39)
        at com.atlassian.stash.internal.spring.lifecycle.LifecycleJohnsonServletFilterModuleContainerFilter.doFilter(LifecycleJohnsonServletFilterModuleContainerFilter.java:42)
        at com.atlassian.plugin.connect.plugin.auth.scope.ApiScopingFilter.doFilter(ApiScopingFilter.java:81)
        at com.atlassian.stash.internal.spring.lifecycle.LifecycleJohnsonServletFilterModuleContainerFilter.doFilter(LifecycleJohnsonServletFilterModuleContainerFilter.java:42)
        at com.atlassian.stash.internal.spring.security.StashAuthenticationFilter.onSuccess(StashAuthenticationFilter.java:220)
        at com.atlassian.stash.internal.spring.security.StashAuthenticationFilter.doFilter(StashAuthenticationFilter.java:103)
        at com.atlassian.stash.internal.web.auth.BeforeLoginPluginAuthenticationFilter.doInsideSpringSecurityChain(BeforeLoginPluginAuthenticationFilter.java:112)
        at com.atlassian.stash.internal.web.auth.BeforeLoginPluginAuthenticationFilter.doFilter(BeforeLoginPluginAuthenticationFilter.java:75)
        at com.atlassian.security.auth.trustedapps.filter.TrustedApplicationsFilter.doFilter(TrustedApplicationsFilter.java:94)
        at com.atlassian.oauth.serviceprovider.internal.servlet.OAuthFilter.doFilter(OAuthFilter.java:67)
        at com.atlassian.stash.internal.spring.lifecycle.LifecycleJohnsonServletFilterModuleContainerFilter.doFilter(LifecycleJohnsonServletFilterModuleContainerFilter.java:42)
        at com.atlassian.plugin.connect.plugin.auth.user.ThreeLeggedAuthFilter.doFilter(ThreeLeggedAuthFilter.java:109)
        at com.atlassian.jwt.internal.servlet.JwtAuthFilter.doFilter(JwtAuthFilter.java:32)
        at com.atlassian.analytics.client.filter.DefaultAnalyticsFilter.doFilter(DefaultAnalyticsFilter.java:38)
        at com.atlassian.analytics.client.filter.AbstractHttpFilter.doFilter(AbstractHttpFilter.java:39)
        at com.atlassian.stash.internal.spring.lifecycle.LifecycleJohnsonServletFilterModuleContainerFilter.doFilter(LifecycleJohnsonServletFilterModuleContainerFilter.java:42)
        at com.atlassian.stash.internal.web.auth.BeforeLoginPluginAuthenticationFilter.doBeforeBeforeLoginFilters(BeforeLoginPluginAuthenticationFilter.java:90)
        at com.atlassian.stash.internal.web.auth.BeforeLoginPluginAuthenticationFilter.doFilter(BeforeLoginPluginAuthenticationFilter.java:73)
        at com.atlassian.stash.internal.request.DefaultRequestManager.doAsRequest(DefaultRequestManager.java:86)
        at com.atlassian.stash.internal.hazelcast.ConfigurableWebFilter.doFilter(ConfigurableWebFilter.java:38)
        at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
        at java.lang.Thread.run(Thread.java:745)
        ... 292 frames trimmed
Caused by: java.nio.file.FileSystemException: /var/atlassian/application-data/bitbucket/shared/data/repositories/2/refs/heads/development/test: Not a directory
        at sun.nio.fs.UnixException.translateToIOException(UnixException.java:91)
        at sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:102)
        at sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:107)
        at sun.nio.fs.UnixFileAttributeViews$Basic.readAttributes(UnixFileAttributeViews.java:55)
        at sun.nio.fs.UnixFileSystemProvider.readAttributes(UnixFileSystemProvider.java:144)
        at sun.nio.fs.LinuxFileSystemProvider.readAttributes(LinuxFileSystemProvider.java:99)
        at java.nio.file.Files.readAttributes(Files.java:1737)
        at com.atlassian.stash.internal.scm.git.ref.LooseRefDb$FileIo.readAttributes(LooseRefDb.java:438)
        at com.atlassian.stash.internal.scm.git.ref.LooseRefDb.lambda$internalResolve$9(LooseRefDb.java:241)
        at com.atlassian.stash.internal.scm.git.ref.LooseRefDb.retryingRead(LooseRefDb.java:151)
        ... 61 common frames omitted

Workaround

The branch permission for the deleted branch can be deleted manually with the REST API.

Run the following query against the DB to identify the branch permission for development/test

select * from "AO_6978BB_RESTRICTED_REF" where "REF_VALUE" = 'refs/heads/development/test';

This query will return a row for each branch permission that's configured for the development/test branch

For each entry, plug the REF_ID into the following DELETE REST call, run one delete for each entry

curl -u <USER> -H 'content-type: application/json' -X DELETE https:/bitbucket.company.com/rest/branch-permissions/2.0/projects/<PROJECT>/repos/<REPO>/restrictions/<REF_ID>

Could not read loose ref when loading Branch Permissions

Details

Description

Summary

Steps to Reproduce

Expected Results

Actual Results

Workaround

Attachments

Activity

People

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