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When running manual pipelines with the custom keyword, you can request specific variables for that step. If you select to re-run entire pipeline, it will spawn a new pipeline but will not carry over the variables' values, nor ask you to input them again.
This doesn't apply to a rerun of the failed steps of a pipeline (it doesn't spawn a new pipeline).
Steps to Reproduce
Setup a custom pipeline and ask for any variable;
Run the custom pipeline and input the variables as needed;
Rerun that build.
Expected Results
The variables should be carried over to the rerun build, or it should ask for you to input the variables again;
Actual Results
The build runs but the custom variables are empty.
Workaround
Run the custom build again directly from the pipelines page.