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Details

Type: Bug
Resolution: Fixed
Priority: Low
Fix Version/s: 7.2.0, 7.1.2
Affects Version/s: 6.10.6
Component/s: Plan Branches, Triggers
Labels:
None

Support reference count:
1
Symptom Severity:
Severity 3 - Minor
Bug Fix Policy:
View Atlassian Server bug fix policy

Description

Issue Summary

If the repository cache is corrupted in Bamboo and a new branch is created, the initial build for the plan brach.

Steps to Reproduce

Create a new plan
Enable automatic branch creation selecting the "When new branch in repository is created" option.
Go to the bamboo/xml-data/build-dir/_git-repositories-cache/<HASH>/.git folder for this repository and delete some files from there (keeping the .git folder}
Create a new branch at the repository

Expected Results

Bamboo should identify the cache is corrupted during the initial build, recreate it, and retry to run the build.

Actual Results

The initial build greys out and the below exception is thrown in the atlassian.bamboo.log file:

2020-08-07 18:04:56,618 ERROR [AtlassianEvent::0-BAM::EVENTS:pool-1-thread-15] [UpdateCreatingCommitInformationListener] Exception when initiating chain branch status
java.lang.RuntimeException: com.atlassian.bamboo.plugins.stash.repository.StashRepositoryException: com.atlassian.bamboo.repository.RepositoryException: Cannot fetch branch 'refs/heads/development2' from 'ssh://git@bitbucket:7999/proj/test_cases.git' to source directory '/var/atlassian/application-data/bamboo/xml-data/build-dir/_git-repositories-cache/f9128b767ea46dc7220dc0e3d4f3c73ebd10a25c'. command [/usr/bin/git fetch ssh://af18cdd8-419e-4144-8f15-056b9465cb54@127.0.0.1:33027/proj/test_cases.git +refs/heads/development2:refs/heads/development2 --update-head-ok] failed with code 128. Working directory was [/var/atlassian/application-data/bamboo/xml-data/build-dir/_git-repositories-cache/f9128b767ea46dc7220dc0e3d4f3c73ebd10a25c]., stderr:
fatal: not a git repository (or any parent up to mount point /var/atlassian/application-data)
Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
	at com.google.common.base.Throwables.propagate(Throwables.java:241)
	at com.atlassian.bamboo.build.creation.UpdateCreatingCommitInformationListener.lambda$onChainCreatedEventInternal$0(UpdateCreatingCommitInformationListener.java:55)
	at com.atlassian.bamboo.variable.CustomVariableContextImpl.withVariableSubstitutor(CustomVariableContextImpl.java:107)
	at com.atlassian.bamboo.build.creation.UpdateCreatingCommitInformationListener.onChainCreatedEventInternal(UpdateCreatingCommitInformationListener.java:51)
	at com.atlassian.bamboo.build.creation.UpdateCreatingCommitInformationListener.onChainCreatedEvent(UpdateCreatingCommitInformationListener.java:32)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at com.atlassian.event.internal.SingleParameterMethodListenerInvoker.invoke(SingleParameterMethodListenerInvoker.java:42)
	at com.atlassian.event.internal.AsynchronousAbleEventDispatcher.lambda$null$0(AsynchronousAbleEventDispatcher.java:37)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
	at com.atlassian.bamboo.utils.BambooRunnables$1.run(BambooRunnables.java:48)
	at com.atlassian.bamboo.security.ImpersonationHelper.runWith(ImpersonationHelper.java:26)
	at com.atlassian.bamboo.security.ImpersonationHelper.runWithSystemAuthority(ImpersonationHelper.java:17)
	at com.atlassian.bamboo.security.ImpersonationHelper$1.run(ImpersonationHelper.java:41)
	at java.lang.Thread.run(Thread.java:748)
Caused by: com.atlassian.bamboo.plugins.stash.repository.StashRepositoryException: com.atlassian.bamboo.repository.RepositoryException: Cannot fetch branch 'refs/heads/development2' from 'ssh://git@bitbucket:7999/proj/test_cases.git' to source directory '/var/atlassian/application-data/bamboo/xml-data/build-dir/_git-repositories-cache/f9128b767ea46dc7220dc0e3d4f3c73ebd10a25c'. command [/usr/bin/git fetch ssh://af18cdd8-419e-4144-8f15-056b9465cb54@127.0.0.1:33027/proj/test_cases.git +refs/heads/development2:refs/heads/development2 --update-head-ok] failed with code 128. Working directory was [/var/atlassian/application-data/bamboo/xml-data/build-dir/_git-repositories-cache/f9128b767ea46dc7220dc0e3d4f3c73ebd10a25c]., stderr:
fatal: not a git repository (or any parent up to mount point /var/atlassian/application-data)
Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
	at com.atlassian.bamboo.plugins.stash.v2.BitbucketServerBranchDetector.getFirstCommitApproximation(BitbucketServerBranchDetector.java:59)
	at com.atlassian.bamboo.plan.branch.BranchCommitInformationManagerImpl.initialiseCommitInformation(BranchCommitInformationManagerImpl.java:64)
	at com.atlassian.bamboo.build.creation.UpdateCreatingCommitInformationListener.lambda$onChainCreatedEventInternal$0(UpdateCreatingCommitInformationListener.java:53)
	... 16 more
Caused by: com.atlassian.bamboo.repository.RepositoryException: Cannot fetch branch 'refs/heads/development2' from 'ssh://git@bitbucket:7999/proj/test_cases.git' to source directory '/var/atlassian/application-data/bamboo/xml-data/build-dir/_git-repositories-cache/f9128b767ea46dc7220dc0e3d4f3c73ebd10a25c'. command [/usr/bin/git fetch ssh://af18cdd8-419e-4144-8f15-056b9465cb54@127.0.0.1:33027/proj/test_cases.git +refs/heads/development2:refs/heads/development2 --update-head-ok] failed with code 128. Working directory was [/var/atlassian/application-data/bamboo/xml-data/build-dir/_git-repositories-cache/f9128b767ea46dc7220dc0e3d4f3c73ebd10a25c]., stderr:
fatal: not a git repository (or any parent up to mount point /var/atlassian/application-data)
Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
	at com.atlassian.bamboo.plugins.git.NativeGitOperationHelper.fetch(NativeGitOperationHelper.java:544)
	at com.atlassian.bamboo.plugins.git.v2.GitBranchDetector.lambda$getLastCommit$1(GitBranchDetector.java:91)
	at io.atlassian.util.concurrent.ManagedLocks$ManagedLockImpl.withLock(ManagedLocks.java:284)
	at com.atlassian.bamboo.plugins.git.v2.GitBranchDetector.getLastCommit(GitBranchDetector.java:82)
	at com.atlassian.bamboo.plugins.git.v2.GitBranchDetector.lambda$getFirstCommitApproximation$0(GitBranchDetector.java:62)
	at io.atlassian.util.concurrent.ManagedLocks$ManagedLockImpl.withLock(ManagedLocks.java:284)
	at com.atlassian.bamboo.plugins.git.v2.GitBranchDetector.getFirstCommitApproximation(GitBranchDetector.java:57)
	at com.atlassian.bamboo.plugins.stash.v2.BitbucketServerBranchDetector.getFirstCommitApproximation(BitbucketServerBranchDetector.java:55)
	... 18 more
Caused by: com.atlassian.bamboo.plugins.git.GitCommandException: command [/usr/bin/git fetch ssh://af18cdd8-419e-4144-8f15-056b9465cb54@127.0.0.1:33027/proj/test_cases.git +refs/heads/development2:refs/heads/development2 --update-head-ok] failed with code 128. Working directory was [/var/atlassian/application-data/bamboo/xml-data/build-dir/_git-repositories-cache/f9128b767ea46dc7220dc0e3d4f3c73ebd10a25c]., stderr:
fatal: not a git repository (or any parent up to mount point /var/atlassian/application-data)
Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
	at com.atlassian.bamboo.plugins.git.GitCommandProcessor.runCommand(GitCommandProcessor.java:729)
	at com.atlassian.bamboo.plugins.git.GitCommandProcessor.runFetchCommand(GitCommandProcessor.java:310)
	at com.atlassian.bamboo.plugins.git.NativeGitOperationHelper.fetch(NativeGitOperationHelper.java:527)
	... 25 more

then, the change detection will also identify the problem:

2020-08-07 18:04:56,729 ERROR [7-DelayedChangeDetectionThread:pool-13-thread-4] [ChainExecutionManagerImpl] Errors getting changes for PROJ-TC2-1
com.atlassian.bamboo.repository.RepositoryException: com.atlassian.bamboo.plugins.stash.repository.StashRepositoryException: com.atlassian.bamboo.repository.RepositoryException: : Cannot fetch branch 'refs/heads/development2' from 'ssh://git@bitbucket:7999/proj/test_cases.git' to source directory '/var/atlassian/application-data/bamboo/xml-data/build-dir/_git-repositories-cache/f9128b767ea46dc7220dc0e3d4f3c73ebd10a25c'. command [/usr/bin/git fetch ssh://7aa2b9bb-b978-428b-991a-cae21aa04ac6@127.0.0.1:33027/proj/test_cases.git +refs/heads/development2:refs/heads/development2 --update-head-ok] failed with code 128. Working directory was [/var/atlassian/application-data/bamboo/xml-data/build-dir/_git-repositories-cache/f9128b767ea46dc7220dc0e3d4f3c73ebd10a25c]., stderr:
fatal: not a git repository (or any parent up to mount point /var/atlassian/application-data)
Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
	at com.atlassian.bamboo.v2.trigger.DefaultChangeDetectionManager.collectInitialStateForBranchBuild(DefaultChangeDetectionManager.java:364)
	at com.atlassian.bamboo.v2.trigger.DefaultChangeDetectionManager.collectAllChangesSinceLastBuild(DefaultChangeDetectionManager.java:160)
	at com.atlassian.bamboo.v2.trigger.DefaultChangeDetectionManager.collectAllChangesSinceLastBuild(DefaultChangeDetectionManager.java:190)
	at com.atlassian.bamboo.build.BuildDetectionActionFactoryImpl$InitialBuildDetectionAction.performDelayedChangeDetection(BuildDetectionActionFactoryImpl.java:230)
	at com.atlassian.bamboo.chains.ChainExecutionManagerImpl$1.getChainState(ChainExecutionManagerImpl.java:250)
	at com.atlassian.bamboo.chains.ChainExecutionManagerImpl.tryStartChainState(ChainExecutionManagerImpl.java:322)
	at com.atlassian.bamboo.chains.ChainExecutionManagerImpl.delayedStart(ChainExecutionManagerImpl.java:242)
	at sun.reflect.GeneratedMethodAccessor2198.invoke(Unknown Source)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:343)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:198)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:163)
	at org.springframework.aop.interceptor.ExposeInvocationInterceptor.invoke(ExposeInvocationInterceptor.java:93)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:186)
	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:212)
	at com.sun.proxy.$Proxy239.delayedStart(Unknown Source)

And finally the cache is deleted:

2020-08-07 18:11:40,513 WARN [20-BAM::Agente 3::Agent:pool-43-thread-1] [AbstractGitExecutor] Deleting git workspace /var/atlassian/application-data/bamboo/xml-data/build-dir/_git-repositories-cache/95acacd8e4e70cecfab3d59ff372ac662c4257e4 due to exception

Workaround

Run a manual build

Initial build for new branches will not run if the repository cache is corrupted

Details

Description

Issue Summary

Steps to Reproduce

Expected Results

Actual Results

Workaround

Attachments

Activity

People

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