Branch builds do not honor Linked Repos includes/excludes on branch creation

PROBLEM
When a new branch is created in a repo where include filters are specified, all build plans using the linked repo with include filters that do not match the change will still run.

TO REPRODUCE

1. Create 1 repo in Stash named say, myrepo
2. Create 2 linked repos from the same Stash repo using different non-overlapping include filter, a/.* and b/.*
3. Create 2 build plans with branch builds enabled, one using each Linked Repo. say, BP-A and BP-B
4. Clone myrepo
5. Create a new branch
6. Commit a change, say create a/a.txt and commit this
7. Push to remote repo
8. BP-A and BP-B will both build
9. Repeat the process, say update a/a.txt and push this change
10. Only BP-A will now build

IMPACT
We have a dev team that wants to use a single monolithinc repo for a bunch of components and this is causing builds to kick off uncecessarily that causes delays in feedback and delays in resolving commit builds and branch inconsistency on a very regular basis directly impacting developers time due to investigation and confusion.