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Type: Bug
Resolution: Fixed
Priority: High
Fix Version/s: 7.2.0
Affects Version/s: 7.2.0-RC02
Component/s: None
Labels:
- affects-server

Introduced in Version:
7.02

JIRA 7.2 RC02 throwing Errors for MySQL

Environment

JIRA 7.2-Server-RC02
MySQL
Steps to Reproduce

Do either of these options

Database Set up
XML Restore
ReIndex Process with our plugin and the error it triggers
Expected Results

All operations finish successfully, without andy database-releated exceptions.

Actual Results

Exception on database setup
- java.lang.RuntimeException: Unable to obtain a connection from the underlying connection pool

Exception on Data Restore (XML Restore)

The last packet successfully received from the server was 3 milliseconds ago. The last packet sent successfully to the server was 3 milliseconds ago.)
java.lang.RuntimeException: com.atlassian.jira.exception.DataAccessException: org.ofbiz.core.entity.GenericDataSourceException: Unable to establish a connection with the database. (Communications link failure

Reindex causes the dropping index errors:

at com.atlassian.sal.core.executor.ThreadLocalDelegateCallable.call(ThreadLocalDelegateCallable.java:42)
at java.util.concurrent.FutureTask.run(Unknown Source)

During DB Set up

2016-07-21 22:47:31,961 http-nio-8080-exec-19 INFO anonymous 1366x19x1 10r3rrj 0:0:0:0:0:0:0:1 /secure/SetupDatabase.jspa [c.a.jira.plugin.JiraPluginManager] Plugin with key 'com.atlassian.jira.jira-issue-nav-components' and name 'jira-issue-nav-components' and version '8.1.21' is being added to the system.
2016-07-21 22:47:31,974 active-objects-init-JiraTenantImpl{id='system'}-0 ERROR anonymous 1366x19x1 10r3rrj 0:0:0:0:0:0:0:1 /secure/SetupDatabase.jspa [NoModule] There was an error getting a DBCP datasource.
java.lang.RuntimeException: Unable to obtain a connection from the underlying connection pool
	at org.ofbiz.core.entity.jdbc.interceptors.connection.ConnectionTracker.trackConnection(ConnectionTracker.java:60)
	at org.ofbiz.core.entity.transaction.DBCPConnectionFactory.trackConnection(DBCPConnectionFactory.java:317)
	at org.ofbiz.core.entity.transaction.DBCPConnectionFactory.getConnection(DBCPConnectionFactory.java:81)
	at org.ofbiz.core.entity.ConnectionFactory.tryGenericConnectionSources(ConnectionFactory.java:69)
	at org.ofbiz.core.entity.transaction.JNDIFactory.getConnection(JNDIFactory.java:164)
	at org.ofbiz.core.entity.TransactionFactory.getConnection(TransactionFactory.java:136)
	at org.ofbiz.core.entity.ConnectionFactory.getConnection(ConnectionFactory.java:59)
	at com.atlassian.jira.ofbiz.DefaultOfBizConnectionFactory.getConnection(DefaultOfBizConnectionFactory.java:44)
	at com.atlassian.activeobjects.jira.JiraTenantAwareDataSourceProvider$OfBizDataSource.getConnection(JiraTenantAwareDataSourceProvider.java:103)
	at com.atlassian.activeobjects.internal.DataSourceProviderActiveObjectsFactory$ActiveObjectsDataSource.getConnection(DataSourceProviderActiveObjectsFactory.java:93)
	... 2 filtered
	at java.lang.reflect.Method.invoke(Method.java:497)
	at net.java.ao.builder.DelegatingDisposableDataSourceHandler.delegate(DelegatingDisposableDataSourceHandler.java:37)
	at net.java.ao.builder.DelegatingDisposableDataSourceHandler.invoke(DelegatingDisposableDataSourceHandler.java:30)
	at com.sun.proxy.$Proxy2924.getConnection(Unknown Source)
	at net.java.ao.DatabaseProvider.getConnection(DatabaseProvider.java:855)
	at net.java.ao.DatabaseProvider.hasIndex(DatabaseProvider.java:1434)
	at net.java.ao.DatabaseProvider.renderDropIndex(DatabaseProvider.java:1419)
	at net.java.ao.DatabaseProvider.renderAction(DatabaseProvider.java:242)
	at net.java.ao.schema.SchemaGenerator$1.apply(SchemaGenerator.java:126)
	at net.java.ao.schema.SchemaGenerator$1.apply(SchemaGenerator.java:124)
	at com.google.common.collect.Iterators$8.transform(Iterators.java:799)
	at com.google.common.collect.TransformedIterator.next(TransformedIterator.java:48)
	at net.java.ao.schema.SchemaGenerator.migrate(SchemaGenerator.java:90)
	at net.java.ao.EntityManager.migrate(EntityManager.java:128)
	at com.atlassian.activeobjects.internal.EntityManagedActiveObjects.migrate(EntityManagedActiveObjects.java:45)
	at com.atlassian.activeobjects.internal.AbstractActiveObjectsFactory$1.doInTransaction(AbstractActiveObjectsFactory.java:77)
	at com.atlassian.activeobjects.internal.AbstractActiveObjectsFactory$1.doInTransaction(AbstractActiveObjectsFactory.java:72)
	at com.atlassian.sal.core.transaction.HostContextTransactionTemplate$1.doInTransaction(HostContextTransactionTemplate.java:25)
	at com.atlassian.jira.DefaultHostContextAccessor.doInTransaction(DefaultHostContextAccessor.java:34)
	... 2 filtered
	at java.lang.reflect.Method.invoke(Method.java:497)
	at com.atlassian.plugin.util.ContextClassLoaderSettingInvocationHandler.invoke(ContextClassLoaderSettingInvocationHandler.java:26)
	at com.sun.proxy.$Proxy43.doInTransaction(Unknown Source)
	... 2 filtered
	at java.lang.reflect.Method.invoke(Method.java:497)
	at com.atlassian.plugin.osgi.bridge.external.HostComponentFactoryBean$DynamicServiceInvocationHandler.invoke(HostComponentFactoryBean.java:136)
	at com.sun.proxy.$Proxy43.doInTransaction(Unknown Source)
	at com.atlassian.sal.core.transaction.HostContextTransactionTemplate.execute(HostContextTransactionTemplate.java:21)
	... 2 filtered
	at java.lang.reflect.Method.invoke(Method.java:497)
	at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:317)
	at org.eclipse.gemini.blueprint.service.importer.support.internal.aop.ServiceInvoker.doInvoke(ServiceInvoker.java:56)
	at org.eclipse.gemini.blueprint.service.importer.support.internal.aop.ServiceInvoker.invoke(ServiceInvoker.java:60)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
	at org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:133)
	at org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:121)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
	at org.eclipse.gemini.blueprint.service.util.internal.aop.ServiceTCCLInterceptor.invokeUnprivileged(ServiceTCCLInterceptor.java:70)
	at org.eclipse.gemini.blueprint.service.util.internal.aop.ServiceTCCLInterceptor.invoke(ServiceTCCLInterceptor.java:53)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
	at org.eclipse.gemini.blueprint.service.importer.support.LocalBundleContextAdvice.invoke(LocalBundleContextAdvice.java:57)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
	at org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:133)
	at org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:121)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:207)
	at com.sun.proxy.$Proxy994.execute(Unknown Source)
	at com.atlassian.activeobjects.internal.AbstractActiveObjectsFactory.create(AbstractActiveObjectsFactory.java:72)
	at com.atlassian.activeobjects.internal.DelegatingActiveObjectsFactory.create(DelegatingActiveObjectsFactory.java:32)
	at com.atlassian.activeobjects.osgi.TenantAwareActiveObjects$1$1$1.call(TenantAwareActiveObjects.java:91)
	at com.atlassian.activeobjects.osgi.TenantAwareActiveObjects$1$1$1.call(TenantAwareActiveObjects.java:86)
	at com.atlassian.sal.core.executor.ThreadLocalDelegateCallable.call(ThreadLocalDelegateCallable.java:42)
	at java.util.concurrent.FutureTask.run(FutureTask.java:266)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
	at java.lang.Thread.run(Thread.java:745)
Caused by: com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: Communications link failure

The last packet successfully received from the server was 1 milliseconds ago.  The last packet sent successfully to the server was 1 milliseconds ago.
	at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
	at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
	at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
	at com.mysql.jdbc.Util.handleNewInstance(Util.java:409)
	at com.mysql.jdbc.SQLError.createCommunicationsException(SQLError.java:1127)
	at com.mysql.jdbc.MysqlIO.reuseAndReadPacket(MysqlIO.java:3715)
	at com.mysql.jdbc.MysqlIO.reuseAndReadPacket(MysqlIO.java:3604)
	at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:4155)
	at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:926)
	at com.mysql.jdbc.MysqlIO.proceedHandshakeWithPluggableAuthentication(MysqlIO.java:1748)
	at com.mysql.jdbc.MysqlIO.doHandshake(MysqlIO.java:1288)
	at com.mysql.jdbc.ConnectionImpl.coreConnect(ConnectionImpl.java:2506)
	at com.mysql.jdbc.ConnectionImpl.connectOneTryOnly(ConnectionImpl.java:2539)
	at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2321)
	at com.mysql.jdbc.ConnectionImpl.<init>(ConnectionImpl.java:832)
	at com.mysql.jdbc.JDBC4Connection.<init>(JDBC4Connection.java:46)
	... 3 filtered
	at java.lang.reflect.Constructor.newInstance(Constructor.java:422)
	at com.mysql.jdbc.Util.handleNewInstance(Util.java:409)
	at com.mysql.jdbc.ConnectionImpl.getInstance(ConnectionImpl.java:417)
	at com.mysql.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java:344)
	at org.apache.commons.dbcp2.DriverConnectionFactory.createConnection(DriverConnectionFactory.java:39)
	at org.apache.commons.dbcp2.PoolableConnectionFactory.makeObject(PoolableConnectionFactory.java:256)
	at org.apache.commons.pool2.impl.GenericObjectPool.create(GenericObjectPool.java:861)
	at org.apache.commons.pool2.impl.GenericObjectPool.borrowObject(GenericObjectPool.java:435)
	at org.apache.commons.pool2.impl.GenericObjectPool.borrowObject(GenericObjectPool.java:363)
	at org.apache.commons.dbcp2.PoolingDataSource.getConnection(PoolingDataSource.java:134)
	at org.apache.commons.dbcp2.BasicDataSource.getConnection(BasicDataSource.java:1533)
	at org.ofbiz.core.entity.transaction.DBCPConnectionFactory$1.call(DBCPConnectionFactory.java:321)
	at org.ofbiz.core.entity.transaction.DBCPConnectionFactory$1.call(DBCPConnectionFactory.java:318)
	at org.ofbiz.core.entity.jdbc.interceptors.connection.ConnectionTracker.trackConnection(ConnectionTracker.java:54)
	... 70 more
Caused by: java.io.EOFException: Can not read response from server. Expected to read 4 bytes, read 0 bytes before connection was unexpectedly lost.
	at com.mysql.jdbc.MysqlIO.readFully(MysqlIO.java:3161)
	at com.mysql.jdbc.MysqlIO.reuseAndReadPacket(MysqlIO.java:3615)

During Data Restore

2016-07-21 23:04:49,877 JiraImportTaskExecutionThread-1 WARN admin 1383x701x1 10r3rrj 0:0:0:0:0:0:0:1 /secure/admin/XmlRestore.jspa [c.a.jira.index.AccumulatingResultBuilder] com.atlassian.jira.exception.DataAccessException: org.ofbiz.core.entity.GenericDataSourceException: Unable to establish a connection with the database. (Communications link failure
    
    The last packet successfully received from the server was 3 milliseconds ago.  The last packet sent successfully to the server was 3 milliseconds ago.)
java.lang.RuntimeException: com.atlassian.jira.exception.DataAccessException: org.ofbiz.core.entity.GenericDataSourceException: Unable to establish a connection with the database. (Communications link failure

The last packet successfully received from the server was 3 milliseconds ago.  The last packet sent successfully to the server was 3 milliseconds ago.)
	at com.atlassian.jira.index.DefaultIndex$Failure.<init>(DefaultIndex.java:101)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer$IndexIssuesOperation.perform(DefaultIssueIndexer.java:400)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer$IndexIssuesOperation.perform(DefaultIssueIndexer.java:369)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer.lambda$null$202(DefaultIssueIndexer.java:308)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer$$Lambda$1193/524039629.get(Unknown Source)
	at com.atlassian.jira.index.SimpleIndexingStrategy.get(SimpleIndexingStrategy.java:7)
	at com.atlassian.jira.index.SimpleIndexingStrategy.get(SimpleIndexingStrategy.java:5)
	at com.atlassian.jira.index.MultiThreadedIndexingStrategy$1.call(MultiThreadedIndexingStrategy.java:33)
	at com.atlassian.jira.index.MultiThreadedIndexingStrategy$1.call(MultiThreadedIndexingStrategy.java:31)
	at com.atlassian.jira.util.concurrent.BoundedExecutor$2.call(BoundedExecutor.java:68)
	at java.util.concurrent.FutureTask.run(FutureTask.java:266)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
	at java.lang.Thread.run(Thread.java:745)
Caused by: com.atlassian.jira.exception.DataAccessException: org.ofbiz.core.entity.GenericDataSourceException: Unable to establish a connection with the database. (Communications link failure

The last packet successfully received from the server was 3 milliseconds ago.  The last packet sent successfully to the server was 3 milliseconds ago.)
	at com.atlassian.jira.ofbiz.DefaultOfBizDelegator.findByAnd(DefaultOfBizDelegator.java:94)
	at com.atlassian.jira.ofbiz.WrappingOfBizDelegator.findByAnd(WrappingOfBizDelegator.java:73)
	at com.atlassian.jira.issue.changehistory.DefaultChangeHistoryManager.getAllChangeItems(DefaultChangeHistoryManager.java:187)
	at com.atlassian.jira.issue.index.DefaultChangeHistoryRetriever.apply(DefaultChangeHistoryRetriever.java:24)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer$DefaultDocumentCreationStrategy$1.apply(DefaultIssueIndexer.java:564)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer$DefaultDocumentCreationStrategy$1.apply(DefaultIssueIndexer.java:561)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer$DefaultDocumentCreationStrategy.get(DefaultIssueIndexer.java:554)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer$IndexIssuesOperation.perform(DefaultIssueIndexer.java:380)
	... 12 more
Caused by: org.ofbiz.core.entity.GenericDataSourceException: Unable to establish a connection with the database. (Communications link failure

The last packet successfully received from the server was 3 milliseconds ago.  The last packet sent successfully to the server was 3 milliseconds ago.)
	at org.ofbiz.core.entity.jdbc.SQLProcessor.getConnection(SQLProcessor.java:399)
	at org.ofbiz.core.entity.jdbc.SQLProcessor.prepareStatement(SQLProcessor.java:543)
	at org.ofbiz.core.entity.GenericDAO.createEntityListIterator(GenericDAO.java:960)
	at org.ofbiz.core.entity.GenericDAO.selectByAnd(GenericDAO.java:730)
	at org.ofbiz.core.entity.GenericHelperDAO.findByAnd(GenericHelperDAO.java:150)
	at org.ofbiz.core.entity.GenericDelegator.findByAnd(GenericDelegator.java:903)
	at org.ofbiz.core.entity.GenericDelegator.findByAnd(GenericDelegator.java:881)
	at com.atlassian.jira.ofbiz.DefaultOfBizDelegator.findByAnd(DefaultOfBizDelegator.java:92)
	... 20 more
Caused by: com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: Communications link failure

The last packet successfully received from the server was 3 milliseconds ago.  The last packet sent successfully to the server was 3 milliseconds ago.
	at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
	at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
	at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
	at com.mysql.jdbc.Util.handleNewInstance(Util.java:409)
	at com.mysql.jdbc.SQLError.createCommunicationsException(SQLError.java:1127)
	at com.mysql.jdbc.MysqlIO.reuseAndReadPacket(MysqlIO.java:3715)
	at com.mysql.jdbc.MysqlIO.reuseAndReadPacket(MysqlIO.java:3604)
	at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:4155)
	at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:926)
	at com.mysql.jdbc.MysqlIO.proceedHandshakeWithPluggableAuthentication(MysqlIO.java:1748)
	at com.mysql.jdbc.MysqlIO.doHandshake(MysqlIO.java:1288)
	at com.mysql.jdbc.ConnectionImpl.coreConnect(ConnectionImpl.java:2506)
	at com.mysql.jdbc.ConnectionImpl.connectOneTryOnly(ConnectionImpl.java:2539)
	at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2321)
	at com.mysql.jdbc.ConnectionImpl.<init>(ConnectionImpl.java:832)
	at com.mysql.jdbc.JDBC4Connection.<init>(JDBC4Connection.java:46)
	... 2 filtered
	at java.lang.reflect.Constructor.newInstance(Constructor.java:422)
	at com.mysql.jdbc.Util.handleNewInstance(Util.java:409)
	at com.mysql.jdbc.ConnectionImpl.getInstance(ConnectionImpl.java:417)
	at com.mysql.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java:344)
	at java.sql.DriverManager.getConnection(DriverManager.java:664)
	at java.sql.DriverManager.getConnection(DriverManager.java:247)
	at org.ofbiz.core.entity.ConnectionFactory.tryGenericConnectionSources(ConnectionFactory.java:87)
	at org.ofbiz.core.entity.transaction.JNDIFactory.getConnection(JNDIFactory.java:164)
	at org.ofbiz.core.entity.TransactionFactory.getConnection(TransactionFactory.java:136)
	at org.ofbiz.core.entity.ConnectionFactory.getConnection(ConnectionFactory.java:59)
	at org.ofbiz.core.entity.jdbc.SQLProcessor.getConnection(SQLProcessor.java:394)
	... 28 more
Caused by: java.io.EOFException: Can not read response from server. Expected to read 4 bytes, read 0 bytes before connection was unexpectedly lost.
	at com.mysql.jdbc.MysqlIO.readFully(MysqlIO.java:3161)
	at com.mysql.jdbc.MysqlIO.reuseAndReadPacket(MysqlIO.java:3615)
	... 51 more
2016-07-21 23:04:49,884 JiraImportTaskExecutionThread-1 ERROR admin 1383x701x1 10r3rrj 0:0:0:0:0:0:0:1 /secure/admin/XmlRestore.jspa [c.a.j.bc.dataimport.DefaultDataImportService] Error importing data: com.atlassian.jira.index.IndexingFailureException: Indexing completed with 1 errors
com.atlassian.jira.index.IndexingFailureException: Indexing completed with 1 errors
	at com.atlassian.jira.index.AccumulatingResultBuilder$CompositeResult.await(AccumulatingResultBuilder.java:150)
	at com.atlassian.jira.issue.index.DefaultIndexManager.doIndexIssuesInBatchMode(DefaultIndexManager.java:986)
	at com.atlassian.jira.issue.index.DefaultIndexManager.doStopTheWorldReindex(DefaultIndexManager.java:961)
	at com.atlassian.jira.issue.index.DefaultIndexManager.lambda$reIndexAll$787(DefaultIndexManager.java:326)
	at com.atlassian.jira.issue.index.DefaultIndexManager$$Lambda$543/1593758938.run(Unknown Source)
	at com.atlassian.jira.issue.index.DefaultIndexManager.withReindexLock(DefaultIndexManager.java:359)
	at com.atlassian.jira.issue.index.DefaultIndexManager.reIndexAll(DefaultIndexManager.java:326)
	at com.atlassian.jira.issue.index.DefaultIndexManager.reIndexAll(DefaultIndexManager.java:241)
	at com.atlassian.jira.issue.index.DefaultIndexManager.reIndexAll(DefaultIndexManager.java:234)
	at com.atlassian.jira.issue.index.DefaultIndexManager.reIndexAll(DefaultIndexManager.java:230)
	at com.atlassian.jira.issue.index.DefaultIndexManager.activate(DefaultIndexManager.java:203)
	... 3 filtered
	at java.lang.reflect.Method.invoke(Method.java:497)
	at com.atlassian.jira.config.component.SwitchingInvocationHandler.invoke(SwitchingInvocationHandler.java:22)
	at com.sun.proxy.$Proxy163.activate(Unknown Source)
	at com.atlassian.jira.util.index.CompositeIndexLifecycleManager.activate(CompositeIndexLifecycleManager.java:134)
	at com.atlassian.jira.util.index.CompositeIndexLifecycleManager.activate(CompositeIndexLifecycleManager.java:128)
	at com.atlassian.jira.bc.dataimport.DefaultDataImportService.reindex(DefaultDataImportService.java:972)
	at com.atlassian.jira.bc.dataimport.DefaultDataImportService.performImport(DefaultDataImportService.java:766)
	at com.atlassian.jira.bc.dataimport.DefaultDataImportService.doImport(DefaultDataImportService.java:324)
	at com.atlassian.jira.web.action.setup.DataImportAsyncCommand.call(DataImportAsyncCommand.java:60)
	at com.atlassian.jira.web.action.setup.DataImportAsyncCommand.call(DataImportAsyncCommand.java:28)
	at com.atlassian.jira.task.ImportTaskManagerImpl$TaskCallableDecorator.call(ImportTaskManagerImpl.java:157)
	at com.atlassian.jira.task.ImportTaskManagerImpl$TaskCallableDecorator.call(ImportTaskManagerImpl.java:133)
	at java.util.concurrent.FutureTask.run(FutureTask.java:266)
	at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
	at java.util.concurrent.FutureTask.run(FutureTask.java:266)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
	at java.lang.Thread.run(Thread.java:745)

Apart from this we are also seeing Dropping Index errors during the reIndex process. See Below error

2016-07-21 14:02:15,734 http-nio-8302-exec-10 ERROR admin 842x1499x1 gav866 0:0:0:0:0:0:0:1 /rest/zephyr/latest/execution/indexAll [c.a.p.r.c.error.jersey.ThrowableExceptionMapper] Uncaught exception thrown by REST service: bundle [com.thed.zephyr.je]
com.atlassian.activeobjects.internal.ActiveObjectsInitException: bundle [com.thed.zephyr.je]
at com.atlassian.activeobjects.osgi.TenantAwareActiveObjects$1$1$1.call(TenantAwareActiveObjects.java:95)
at com.atlassian.activeobjects.osgi.TenantAwareActiveObjects$1$1$1.call(TenantAwareActiveObjects.java:86)
at com.atlassian.sal.core.executor.ThreadLocalDelegateCallable.call(ThreadLocalDelegateCallable.java:42)
at java.util.concurrent.FutureTask.run(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)
Caused by: com.atlassian.activeobjects.internal.ActiveObjectsSqlException: There was a SQL exception thrown by the Active Objects library:
Database:
- name:MySQL
- version:5.6.29
- minor version:6
- major version:5
- name:MySQL Connector Java
- version:mysql-connector-java-5.1.38 ( Revision: fe541c166cec739c74cc727c5da96c1028b4834a )
 
java.sql.SQLException: Cannot drop index 'index_ao_7deabf_ste1617810863': needed in a foreign key constraint
at com.atlassian.activeobjects.internal.EntityManagedActiveObjects.migrate(EntityManagedActiveObjects.java:47)
at com.atlassian.activeobjects.internal.AbstractActiveObjectsFactory$1.doInTransaction(AbstractActiveObjectsFactory.java:77)
at com.atlassian.activeobjects.internal.AbstractActiveObjectsFactory$1.doInTransaction(AbstractActiveObjectsFactory.java:72)
at com.atlassian.sal.core.transaction.HostContextTransactionTemplate$1.doInTransaction(HostContextTransactionTemplate.java:25)
at com.atlassian.jira.DefaultHostContextAccessor.doInTransaction(DefaultHostContextAccessor.java:34)
... 2 filtered
at java.lang.reflect.Method.invoke(Unknown Source)
at com.atlassian.plugin.util.ContextClassLoaderSettingInvocationHandler.invoke(ContextClassLoaderSettingInvocationHandler.java:26)
at com.sun.proxy.$Proxy136.doInTransaction(Unknown Source)

Notes

It seems working fine with JIRA 7.2 RC01.

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is related to: JSP-271584 Loading...

was cloned as: RAID-19 Loading...

Assignee:: Unassigned
Reporter:: Ignat (Inactive)
Votes:: 16 Vote for this issue
Watchers:: 17 Start watching this issue

Created:: 22/Jul/2016 10:32 AM
Updated:: 29/Sep/2023 3:23 PM
Resolved:: 29/Jul/2016 9:17 AM

Details

Description

JIRA 7.2 RC02 throwing Errors for MySQL

Environment

Steps to Reproduce

Expected Results

Actual Results

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