Mods Detector incorrectly reports removed files for JIRA Professional WAR/EAR deployments

JIRA's system info page will report the following files are removed below. It only seems to appear for EAR/WAR deployments of Professional Edition:

[Installation Type: EAR/WAR] com/atlassian/jira/issue/fields/layout/column/enterprise/EnterpriseColumnLayoutManager.class, com/atlassian/jira/web/action/admin/issuesecurity/DeleteIssueSecurityLevel.class, com/atlassian/jira/web/action/admin/issuefields/enterprise/SelectFieldLayoutScheme.class, secure/admin/views/issuesecurity/editscheme.jsp, com/atlassian/jira/web/action/admin/issuefields/enterprise/EditFieldLayoutScheme.class, com/atlassian/jira/web/action/admin/workflow/scheme/AddWorkflowSchemeEntity.class, com/atlassian/jira/jelly/tag/admin/enterprise/AddIssueSecurityLevel.class, com/atlassian/jira/web/action/admin/issuesecurity/SchemeAwareIssueSecurityAction.class, com/atlassian/jira/jelly/tag/enterprise/IssueSchemeLevelAwareActionTagSupport.class, secure/project/views/issuefields/selectissuetypescreenscheme.jsp, secure/project/views/issuefields/selectfieldlayoutscheme.jsp, com/atlassian/jira/web/action/admin/issuesecurity/DeleteIssueSecurity.class, secure/admin/views/issuefields/screens/enterprise/editissuetypescreenscheme.jsp, secure/project/views/workflows/workflowmigrationwithfailure.jsp, com/atlassian/jira/web/action/admin/issuesecurity/AddIssueSecurity.class, secure/admin/views/issuesecurity/editissuesecurities.jsp, com/atlassian/jira/jelly/enterprise/IssueSchemeAware.class, com/atlassian/jira/web/action/admin/issuesecurity/SelectProjectSecuritySchemeStep2.class, com/atlassian/jira/issue/fields/screen/issuetype/MultipleIssueTypeScreenSchemeManager.class, com/atlassian/jira/web/action/admin/issuefields/screens/enterprise/SelectIssueTypeScreenScheme.class, com/atlassian/jira/web/action/admin/workflow/scheme/AddScheme.class, com/atlassian/jira/web/action/admin/workflow/scheme/SelectProjectWorkflowScheme.class, com/atlassian/jira/jelly/tag/admin/enterprise/CreateIssueSecurityScheme.class, secure/project/views/workflows/selectprojectschemestep3.jsp, com/atlassian/jira/web/action/admin/issuefields/enterprise/ViewFieldLayouts.class, com/atlassian/jira/notification/type/enterprise/ComponentLead.class, secure/project/views/workflows/workflowmigrationaborted.jsp, com/atlassian/jira/jelly/enterprise/JiraTagLib.class, secure/admin/views/issuefields/screens/enterprise/confirmdeleteissuetypescreenscheme.jsp, com/atlassian/jira/web/action/admin/issuesecurity/CopyScheme.class, secure/project/views/workflows/selectprojectscheme.jsp, com/atlassian/jira/web/action/admin/issuesecurity/DeleteScheme.class, com/atlassian/jira/action/projectcategory/ProjectCategoryDelete.class, secure/admin/views/issuesecurity/deleteissuesecuritylevel.jsp, secure/project/views/workflows/selectprojectschemestep2.jsp, enterpriseupgrades.xml, com/atlassian/jira/web/action/admin/issuesecurity/SelectProjectIssueSecurityScheme.class, com/atlassian/jira/web/action/admin/workflow/scheme/EditWorkflowSchemeEntities.class, secure/admin/views/issuesecurity/addscheme.jsp, com/atlassian/jira/web/action/admin/issuefields/enterprise/AbstractEditFieldLayoutSchemeAction.class, com/atlassian/jira/web/action/admin/issuesecurity/EditIssueSecurities.class, com/atlassian/jira/web/action/admin/issuefields/enterprise/CopyFieldLayoutScheme.class, com/atlassian/jira/web/action/admin/workflow/scheme/CopyScheme.class, secure/admin/views/issuefields/screens/enterprise/viewissuetypescreenschemes.jsp, com/atlassian/jira/web/action/admin/issuefields/enterprise/UpdateScheme.class, secure/admin/views/issuesecurity/addissuesecurity.jsp, com/atlassian/jira/action/projectcategory/ProjectCategoryEdit.class, com/atlassian/jira/web/action/project/enterprise/SelectComponentAssignees.class, com/atlassian/jira/web/action/admin/issuefields/enterprise/ConfigureFieldLayout.class, com/atlassian/jira/jelly/tag/enterprise/IssueSchemeAwareActionTagSupport.class, com/atlassian/jira/web/action/admin/workflow/scheme/SelectProjectWorkflowSchemeStep3.class, com/atlassian/jira/web/action/admin/issuefields/enterprise/EditFieldLayoutItem.class, secure/admin/views/issuefields/screens/enterprise/configureissuetypescreenscheme.jsp, com/atlassian/jira/web/action/admin/issuesecurity/EditScheme.class, secure/admin/views/issuesecurity/deletescheme.jsp, com/atlassian/jira/web/action/admin/workflow/scheme/DeleteWorkflowSchemeEntity.class, secure/project/views/issuesecurity/selectschemestep2.jsp, com/atlassian/jira/web/action/projectcategory/AddProjectCategory.class, secure/admin/views/issuesecurity/viewschemes.jsp, com/atlassian/jira/web/action/admin/workflow/scheme/DeleteScheme.class, com/atlassian/jira/issue/EnterpriseIssueVerifier.class, com/atlassian/jira/jelly/tag/issue/enterprise/CreateIssue.class, com/atlassian/jira/web/action/admin/workflow/scheme/SelectProjectWorkflowSchemeStep2.class, com/atlassian/jira/jelly/tag/project/enterprise/SelectComponentAssignees.class, com/atlassian/jira/web/action/admin/issuefields/screens/enterprise/ViewIssueTypeScreenSchemes.class, com/atlassian/jira/jelly/enterprise/IssueSchemeLevelAware.class, com/atlassian/jira/jelly/tag/admin/enterprise/SelectProjectScheme.class, com/atlassian/jira/web/action/admin/issuefields/enterprise/AbstractFieldLayoutAction.class, com/atlassian/jira/issue/security/IssueSecuritySchemeManagerImpl.class, com/atlassian/jira/action/projectcategory/ProjectCategoryCreate.class, com/atlassian/jira/web/action/admin/workflow/scheme/ViewSchemes.class, com/atlassian/jira/web/action/admin/issuefields/enterprise/EditFieldLayout.class, secure/admin/views/issuefields/screens/enterprise/copyissuetypescreenscheme.jsp, com/atlassian/jira/web/action/admin/issuefields/screens/enterprise/ConfigureIssueTypeScreenScheme.class, com/atlassian/jira/web/action/admin/workflow/scheme/EditScheme.class, com/atlassian/jira/web/action/admin/issuesecurity/ViewSchemes.class, com/atlassian/jira/upgrade/tasks/enterprise/UpgradeTask_Build69.class, com/atlassian/jira/web/action/admin/issuefields/enterprise/ViewSchemes.class, com/atlassian/jira/web/action/issue/enterprise/MoveIssueUpdateWorkflow.class, com/atlassian/jira/upgrade/tasks/enterprise/UpgradeTask_Build84.class, com/atlassian/jira/web/action/admin/issuefields/enterprise/DeleteScheme.class, com/atlassian/jira/web/action/admin/workflow/scheme/SchemeAwareWorkflowAction.class, secure/admin/views/issuesecurity/deleteissuesecurity.jsp, com/atlassian/jira/web/action/projectcategory/EditProjectCategory.class, secure/admin/views/issuefields/screens/enterprise/editissuetypescreenschemeentity.jsp, com/atlassian/jira/workflow/migration/enterprise/EnterpriseWorkflowTaskContext.class, com/atlassian/jira/web/action/admin/issuefields/enterprise/CopyFieldLayout.class, com/atlassian/jira/workflow/migration/enterprise/EnterpriseWorkflowMigrationHelper.class, secure/project/views/issuesecurity/selectprojectissuesecurityscheme.jsp, com/atlassian/jira/web/action/admin/issuefields/enterprise/AbstractSchemeAware.class, com/atlassian/jira/web/action/admin/issuefields/enterprise/SchemeAware.class, com/atlassian/jira/web/action/admin/issuefields/enterprise/ConfigureFieldLayoutScheme.class, com/atlassian/jira/web/action/projectcategory/DeleteProjectCategory.class, com/atlassian/jira/issue/fields/layout/field/enterprise/EnterpriseFieldLayoutManager.class, com/atlassian/jira/jelly/tag/admin/enterprise/AddIssueSecurity.class, com/atlassian/jira/web/action/admin/issuesecurity/AddScheme.class, com/atlassian/jira/web/action/admin/issuefields/screens/enterprise/EditIssueTypeScreenScheme.class