Bamboo deletes all files in submodule

Hi,

We stumbled upon a problem in bamboo where it cannot checkout a git submodule

• developer makes changes in a locally cloned submodule
• she then moves submodule HEAD in superproject without pushing her local changes in submodule itself
• Bamboo starts building project plan and because of the above fails with "fatal: reference is not a tree" error.
• Bamboo then deletes all the files in problematic submodule (confirmed by git status)
• Subsequent builds fail because files are not there anymore and

simple 14-apr-2016 20:48:23 Build MPW1 - Unit regressions - DEBUG #290 (MPW1-UR-DEB-290) started building on agent Test Agent
simple 14-apr-2016 20:48:23 Regressoin Test Agent
simple 14-apr-2016 20:48:23 Build working directory is /home/bamboo/build-dir/131074/MPW1-UR-DEB
simple 14-apr-2016 20:48:23 Executing build MPW1 - Unit regressions - DEBUG #290 (MPW1-UR-DEB-290)
simple 14-apr-2016 20:48:23 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout'
simple 14-apr-2016 20:48:23 Updating source code to revision: 6e9d51bba91b8bf4e00149a7f125b8dc71639961
simple 14-apr-2016 20:48:23 /usr/bin/git log -1 --encoding=UTF-8 --format=%H HEAD
simple 14-apr-2016 20:48:23 /usr/bin/git ls-remote ssh://git@192.168.2.90/mpw1.git
simple 14-apr-2016 20:48:24 Fetching 'refs/heads/develop' from 'ssh://git@192.168.2.90/mpw1.git'.
simple 14-apr-2016 20:48:24 /usr/bin/git fetch ssh://git@192.168.2.90/mpw1.git +refs/heads/develop:refs/heads/develop --update-head-ok --progress --verbose
simple 14-apr-2016 20:48:24 Warning: Permanently added '192.168.2.90' (RSA) to the list of known hosts.
simple 14-apr-2016 20:48:24 From ssh://192.168.2.90/mpw1
simple 14-apr-2016 20:48:24 = [up to date] develop -> develop
simple 14-apr-2016 20:48:24 /usr/bin/git log -1 --encoding=UTF-8 --format=%H 6e9d51bba91b8bf4e00149a7f125b8dc71639961
simple 14-apr-2016 20:48:24 Checking out revision 6e9d51bba91b8bf4e00149a7f125b8dc71639961.
simple 14-apr-2016 20:48:24 /usr/bin/git remote set-url origin file:///home/bamboo/build-dir/_git-repositories-cache/78f4640a8f3a38d7931eb981528e94b85d24f694
simple 14-apr-2016 20:48:25 /usr/bin/git show-ref develop
simple 14-apr-2016 20:48:25 /usr/bin/git checkout -f 6e9d51bba91b8bf4e00149a7f125b8dc71639961
simple 14-apr-2016 20:48:25 Previous HEAD position was 541487a... Merge branch 'develop' of ssh://192.168.2.90/mpw1 into develop
simple 14-apr-2016 20:48:25 HEAD is now at 6e9d51b... [nfc]
simple 14-apr-2016 20:48:25 /usr/bin/git remote set-url origin ssh://git@192.168.2.90/mpw1.git
simple 14-apr-2016 20:48:25 /usr/bin/git submodule update --init --recursive
simple 14-apr-2016 20:48:26 Warning: Permanently added '192.168.2.90' (RSA) to the list of known hosts.
simple 14-apr-2016 20:48:26 From ssh://192.168.2.90/common
simple 14-apr-2016 20:48:26 1de14db..e021958 develop -> origin/develop
simple 14-apr-2016 20:48:26 2358fd7..14fcae5 temporary -> origin/temporary
simple 14-apr-2016 20:48:26 Submodule path 'IP/common': checked out '02d032c31b50eb2159fefbda48c8ec3e60a3a6ee'
simple 14-apr-2016 20:48:27 Warning: Permanently added '192.168.2.90' (RSA) to the list of known hosts.
simple 14-apr-2016 20:48:27 From ssh://192.168.2.90/nfc
simple 14-apr-2016 20:48:27 7a747f7..08c9ba8 develop -> origin/develop
simple 14-apr-2016 20:48:27 * [new branch] system_tests -> origin/system_tests
simple 14-apr-2016 20:48:27 fatal: reference is not a tree: fcd5d1adb43d7df4497c729b66fc1780ee6715c4
simple 14-apr-2016 20:48:27 Unable to checkout 'fcd5d1adb43d7df4497c729b66fc1780ee6715c4' in submodule path 'IP/nfc'
error 14-apr-2016 20:48:27 Checkout to revision 6e9d51bba91b8bf4e00149a7f125b8dc71639961 has failed.
simple 14-apr-2016 20:48:27 /usr/bin/git remote set-url origin file:///home/bamboo/build-dir/_git-repositories-cache/78f4640a8f3a38d7931eb981528e94b85d24f694
simple 14-apr-2016 20:48:27 Warning: failed to checkout source code to directory '/home/bamboo/build-dir/131074/MPW1-UR-DEB/mpw1', trying to recover...
simple 14-apr-2016 20:48:29 Cleaned source directory '/home/bamboo/build-dir/131074/MPW1-UR-DEB/mpw1'...
simple 14-apr-2016 20:48:29 Checking out revision 6e9d51bba91b8bf4e00149a7f125b8dc71639961.
simple 14-apr-2016 20:48:29 Creating local git repository in '/home/bamboo/build-dir/131074/MPW1-UR-DEB/mpw1/.git'.
simple 14-apr-2016 20:48:29 /usr/bin/git clone file:///home/bamboo/build-dir/_git-repositories-cache/78f4640a8f3a38d7931eb981528e94b85d24f694 -n --reference /home/bamboo/build-dir/_git-repositories-cache/78f4640a8f3a38d7931eb981528e94b85d24f694 /home/bamboo/build-dir/131074/MPW1-UR-DEB/mpw1
simple 14-apr-2016 20:48:29 Initialized empty Git repository in /home/bamboo/build-dir/131074/MPW1-UR-DEB/mpw1/.git/
simple 14-apr-2016 20:48:29 /usr/bin/git show-ref develop
simple 14-apr-2016 20:48:29 /usr/bin/git checkout -f 6e9d51bba91b8bf4e00149a7f125b8dc71639961
simple 14-apr-2016 20:48:30 Note: checking out '6e9d51bba91b8bf4e00149a7f125b8dc71639961'.
simple 14-apr-2016 20:48:30
simple 14-apr-2016 20:48:30 You are in 'detached HEAD' state. You can look around, make experimental
simple 14-apr-2016 20:48:30 changes and commit them, and you can discard any commits you make in this
simple 14-apr-2016 20:48:30 state without impacting any branches by performing another checkout.
simple 14-apr-2016 20:48:30
simple 14-apr-2016 20:48:30 If you want to create a new branch to retain commits you create, you may
simple 14-apr-2016 20:48:30 do so (now or later) by using -b with the checkout command again. Example:
simple 14-apr-2016 20:48:30
simple 14-apr-2016 20:48:30 git checkout -b new_branch_name
simple 14-apr-2016 20:48:30
simple 14-apr-2016 20:48:30 HEAD is now at 6e9d51b... [nfc]
simple 14-apr-2016 20:48:30 /usr/bin/git remote set-url origin ssh://git@192.168.2.90/mpw1.git
simple 14-apr-2016 20:48:30 /usr/bin/git submodule update --init --recursive
simple 14-apr-2016 20:48:31 Submodule 'IP/nfc' (ssh://git@192.168.2.90/nfc.git) registered for path 'IP/nfc'
simple 14-apr-2016 20:49:58 Initialized empty Git repository in /home/bamboo/build-dir/131074/MPW1-UR-DEB/mpw1/IP/nfc/.git/
simple 14-apr-2016 20:49:58 Warning: Permanently added '192.168.2.90' (RSA) to the list of known hosts.
simple 14-apr-2016 20:50:05 Warning: Permanently added '192.168.2.90' (RSA) to the list of known hosts.
simple 14-apr-2016 20:50:05 fatal: reference is not a tree: fcd5d1adb43d7df4497c729b66fc1780ee6715c4
simple 14-apr-2016 20:50:05 Unable to checkout 'fcd5d1adb43d7df4497c729b66fc1780ee6715c4' in submodule path 'IP/nfc'
error 14-apr-2016 20:50:05 Checkout to revision 6e9d51bba91b8bf4e00149a7f125b8dc71639961 has failed.
simple 14-apr-2016 20:50:05 /usr/bin/git remote set-url origin file:///home/bamboo/build-dir/_git-repositories-cache/78f4640a8f3a38d7931eb981528e94b85d24f694
simple 14-apr-2016 20:50:05 Updating source code to revision: 6e9d51bba91b8bf4e00149a7f125b8dc71639961
simple 14-apr-2016 20:50:05 /usr/bin/git log -1 --encoding=UTF-8 --format=%H HEAD
simple 14-apr-2016 20:50:06 /usr/bin/git ls-remote ssh://git@192.168.2.90/mpw1.git
simple 14-apr-2016 20:50:06 Fetching 'refs/heads/develop' from 'ssh://git@192.168.2.90/mpw1.git'.
simple 14-apr-2016 20:50:06 /usr/bin/git fetch ssh://git@192.168.2.90/mpw1.git +refs/heads/develop:refs/heads/develop --update-head-ok --progress --verbose
simple 14-apr-2016 20:50:06 Warning: Permanently added '192.168.2.90' (RSA) to the list of known hosts.
simple 14-apr-2016 20:50:06 From ssh://192.168.2.90/mpw1
simple 14-apr-2016 20:50:06 = [up to date] develop -> develop
simple 14-apr-2016 20:50:07 /usr/bin/git log -1 --encoding=UTF-8 --format=%H 6e9d51bba91b8bf4e00149a7f125b8dc71639961
simple 14-apr-2016 20:50:07 Checking out revision 6e9d51bba91b8bf4e00149a7f125b8dc71639961.
simple 14-apr-2016 20:50:07 /usr/bin/git remote set-url origin file:///home/bamboo/build-dir/_git-repositories-cache/78f4640a8f3a38d7931eb981528e94b85d24f694
simple 14-apr-2016 20:50:07 /usr/bin/git show-ref develop
simple 14-apr-2016 20:50:07 /usr/bin/git checkout -f 6e9d51bba91b8bf4e00149a7f125b8dc71639961
simple 14-apr-2016 20:50:08 HEAD is now at 6e9d51b... [nfc]
simple 14-apr-2016 20:50:08 /usr/bin/git remote set-url origin ssh://git@192.168.2.90/mpw1.git
simple 14-apr-2016 20:50:08 /usr/bin/git submodule update --init --recursive
simple 14-apr-2016 20:50:08 Warning: Permanently added '192.168.2.90' (RSA) to the list of known hosts.
simple 14-apr-2016 20:50:09 fatal: reference is not a tree: fcd5d1adb43d7df4497c729b66fc1780ee6715c4
simple 14-apr-2016 20:50:09 Unable to checkout 'fcd5d1adb43d7df4497c729b66fc1780ee6715c4' in submodule path 'IP/nfc'
error 14-apr-2016 20:50:09 Checkout to revision 6e9d51bba91b8bf4e00149a7f125b8dc71639961 has failed.
simple 14-apr-2016 20:50:09 /usr/bin/git remote set-url origin file:///home/bamboo/build-dir/_git-repositories-cache/78f4640a8f3a38d7931eb981528e94b85d24f694
simple 14-apr-2016 20:50:09 Warning: failed to checkout source code to directory '/home/bamboo/build-dir/131074/MPW1-UR-DEB/mpw1', trying to recover...
simple 14-apr-2016 20:50:10 Cleaned source directory '/home/bamboo/build-dir/131074/MPW1-UR-DEB/mpw1'...
simple 14-apr-2016 20:50:10 Checking out revision 6e9d51bba91b8bf4e00149a7f125b8dc71639961.
simple 14-apr-2016 20:50:10 Creating local git repository in '/home/bamboo/build-dir/131074/MPW1-UR-DEB/mpw1/.git'.
simple 14-apr-2016 20:50:10 /usr/bin/git clone file:///home/bamboo/build-dir/_git-repositories-cache/78f4640a8f3a38d7931eb981528e94b85d24f694 -n --reference /home/bamboo/build-dir/_git-repositories-cache/78f4640a8f3a38d7931eb981528e94b85d24f694 /home/bamboo/build-dir/131074/MPW1-UR-DEB/mpw1
simple 14-apr-2016 20:50:10 Initialized empty Git repository in /home/bamboo/build-dir/131074/MPW1-UR-DEB/mpw1/.git/
simple 14-apr-2016 20:50:10 /usr/bin/git show-ref develop
simple 14-apr-2016 20:50:10 /usr/bin/git checkout -f 6e9d51bba91b8bf4e00149a7f125b8dc71639961
simple 14-apr-2016 20:50:11 Note: checking out '6e9d51bba91b8bf4e00149a7f125b8dc71639961'.
simple 14-apr-2016 20:50:11
simple 14-apr-2016 20:50:11 You are in 'detached HEAD' state. You can look around, make experimental
simple 14-apr-2016 20:50:11 changes and commit them, and you can discard any commits you make in this
simple 14-apr-2016 20:50:11 state without impacting any branches by performing another checkout.
simple 14-apr-2016 20:50:11
simple 14-apr-2016 20:50:11 If you want to create a new branch to retain commits you create, you may
simple 14-apr-2016 20:50:11 do so (now or later) by using -b with the checkout command again. Example:
simple 14-apr-2016 20:50:11
simple 14-apr-2016 20:50:11 git checkout -b new_branch_name
simple 14-apr-2016 20:50:11
simple 14-apr-2016 20:50:11 HEAD is now at 6e9d51b... [nfc]
simple 14-apr-2016 20:50:11 /usr/bin/git remote set-url origin ssh://git@192.168.2.90/mpw1.git
simple 14-apr-2016 20:50:11 /usr/bin/git submodule update --init --recursive
simple 14-apr-2016 20:50:11 Submodule 'IP/nfc' (ssh://git@192.168.2.90/nfc.git) registered for path 'IP/nfc'
simple 14-apr-2016 20:51:38 Initialized empty Git repository in /home/bamboo/build-dir/131074/MPW1-UR-DEB/mpw1/IP/nfc/.git/
simple 14-apr-2016 20:51:38 Warning: Permanently added '192.168.2.90' (RSA) to the list of known hosts.
simple 14-apr-2016 20:51:45 Warning: Permanently added '192.168.2.90' (RSA) to the list of known hosts.
simple 14-apr-2016 20:51:45 fatal: reference is not a tree: fcd5d1adb43d7df4497c729b66fc1780ee6715c4
simple 14-apr-2016 20:51:45 Unable to checkout 'fcd5d1adb43d7df4497c729b66fc1780ee6715c4' in submodule path 'IP/nfc'
error 14-apr-2016 20:51:45 Checkout to revision 6e9d51bba91b8bf4e00149a7f125b8dc71639961 has failed.
simple 14-apr-2016 20:51:45 /usr/bin/git remote set-url origin file:///home/bamboo/build-dir/_git-repositories-cache/78f4640a8f3a38d7931eb981528e94b85d24f694
simple 14-apr-2016 20:51:46 Updating source code to revision: 6e9d51bba91b8bf4e00149a7f125b8dc71639961
simple 14-apr-2016 20:51:46 /usr/bin/git log -1 --encoding=UTF-8 --format=%H HEAD
simple 14-apr-2016 20:51:46 /usr/bin/git ls-remote ssh://git@192.168.2.90/mpw1.git
simple 14-apr-2016 20:51:47 Fetching 'refs/heads/develop' from 'ssh://git@192.168.2.90/mpw1.git'.
simple 14-apr-2016 20:51:47 /usr/bin/git fetch ssh://git@192.168.2.90/mpw1.git +refs/heads/develop:refs/heads/develop --update-head-ok --progress --verbose
simple 14-apr-2016 20:51:47 Warning: Permanently added '192.168.2.90' (RSA) to the list of known hosts.
simple 14-apr-2016 20:51:47 From ssh://192.168.2.90/mpw1
simple 14-apr-2016 20:51:47 = [up to date] develop -> develop
simple 14-apr-2016 20:51:47 /usr/bin/git log -1 --encoding=UTF-8 --format=%H 6e9d51bba91b8bf4e00149a7f125b8dc71639961
simple 14-apr-2016 20:51:47 Checking out revision 6e9d51bba91b8bf4e00149a7f125b8dc71639961.
simple 14-apr-2016 20:51:47 /usr/bin/git remote set-url origin file:///home/bamboo/build-dir/_git-repositories-cache/78f4640a8f3a38d7931eb981528e94b85d24f694
simple 14-apr-2016 20:51:47 /usr/bin/git show-ref develop
simple 14-apr-2016 20:51:47 /usr/bin/git checkout -f 6e9d51bba91b8bf4e00149a7f125b8dc71639961
simple 14-apr-2016 20:51:48 HEAD is now at 6e9d51b... [nfc]
simple 14-apr-2016 20:51:48 /usr/bin/git remote set-url origin ssh://git@192.168.2.90/mpw1.git
simple 14-apr-2016 20:51:48 /usr/bin/git submodule update --init --recursive
simple 14-apr-2016 20:51:49 Warning: Permanently added '192.168.2.90' (RSA) to the list of known hosts.
simple 14-apr-2016 20:51:49 fatal: reference is not a tree: fcd5d1adb43d7df4497c729b66fc1780ee6715c4
simple 14-apr-2016 20:51:49 Unable to checkout 'fcd5d1adb43d7df4497c729b66fc1780ee6715c4' in submodule path 'IP/nfc'
error 14-apr-2016 20:51:49 Checkout to revision 6e9d51bba91b8bf4e00149a7f125b8dc71639961 has failed.
simple 14-apr-2016 20:51:49 /usr/bin/git remote set-url origin file:///home/bamboo/build-dir/_git-repositories-cache/78f4640a8f3a38d7931eb981528e94b85d24f694
simple 14-apr-2016 20:51:49 Warning: failed to checkout source code to directory '/home/bamboo/build-dir/131074/MPW1-UR-DEB/mpw1', trying to recover...
simple 14-apr-2016 20:51:50 Cleaned source directory '/home/bamboo/build-dir/131074/MPW1-UR-DEB/mpw1'...
simple 14-apr-2016 20:51:50 Checking out revision 6e9d51bba91b8bf4e00149a7f125b8dc71639961.
simple 14-apr-2016 20:51:50 Creating local git repository in '/home/bamboo/build-dir/131074/MPW1-UR-DEB/mpw1/.git'.
simple 14-apr-2016 20:51:50 /usr/bin/git clone file:///home/bamboo/build-dir/_git-repositories-cache/78f4640a8f3a38d7931eb981528e94b85d24f694 -n --reference /home/bamboo/build-dir/_git-repositories-cache/78f4640a8f3a38d7931eb981528e94b85d24f694 /home/bamboo/build-dir/131074/MPW1-UR-DEB/mpw1
simple 14-apr-2016 20:51:50 Initialized empty Git repository in /home/bamboo/build-dir/131074/MPW1-UR-DEB/mpw1/.git/
simple 14-apr-2016 20:51:50 /usr/bin/git show-ref develop
simple 14-apr-2016 20:51:50 /usr/bin/git checkout -f 6e9d51bba91b8bf4e00149a7f125b8dc71639961
simple 14-apr-2016 20:51:51 Note: checking out '6e9d51bba91b8bf4e00149a7f125b8dc71639961'.
simple 14-apr-2016 20:51:51
simple 14-apr-2016 20:51:51 You are in 'detached HEAD' state. You can look around, make experimental
simple 14-apr-2016 20:51:51 changes and commit them, and you can discard any commits you make in this
simple 14-apr-2016 20:51:51 state without impacting any branches by performing another checkout.
simple 14-apr-2016 20:51:51
simple 14-apr-2016 20:51:51 If you want to create a new branch to retain commits you create, you may
simple 14-apr-2016 20:51:51 do so (now or later) by using -b with the checkout command again. Example:
simple 14-apr-2016 20:51:51
simple 14-apr-2016 20:51:51 git checkout -b new_branch_name
simple 14-apr-2016 20:51:51
simple 14-apr-2016 20:51:51 HEAD is now at 6e9d51b... [nfc]
simple 14-apr-2016 20:51:51 /usr/bin/git remote set-url origin ssh://git@192.168.2.90/mpw1.git
simple 14-apr-2016 20:51:51 /usr/bin/git submodule update --init --recursive
simple 14-apr-2016 20:51:51 Submodule 'IP/nfc' (ssh://git@192.168.2.90/nfc.git) registered for path 'IP/nfc'
simple 14-apr-2016 20:53:20 Initialized empty Git repository in /home/bamboo/build-dir/131074/MPW1-UR-DEB/mpw1/IP/nfc/.git/
simple 14-apr-2016 20:53:20 Warning: Permanently added '192.168.2.90' (RSA) to the list of known hosts.
simple 14-apr-2016 20:53:26 Warning: Permanently added '192.168.2.90' (RSA) to the list of known hosts.
simple 14-apr-2016 20:53:27 fatal: reference is not a tree: fcd5d1adb43d7df4497c729b66fc1780ee6715c4
simple 14-apr-2016 20:53:27 Unable to checkout 'fcd5d1adb43d7df4497c729b66fc1780ee6715c4' in submodule path 'IP/nfc'
error 14-apr-2016 20:53:27 Checkout to revision 6e9d51bba91b8bf4e00149a7f125b8dc71639961 has failed.
simple 14-apr-2016 20:53:27 /usr/bin/git remote set-url origin file:///home/bamboo/build-dir/_git-repositories-cache/78f4640a8f3a38d7931eb981528e94b85d24f694
error 14-apr-2016 20:53:27 Error occurred while running Task 'Checkout Default Repository(1)' of type com.atlassian.bamboo.plugins.vcs:task.vcs.checkout.
error 14-apr-2016 20:53:27 java.lang.RuntimeException: com.atlassian.bamboo.repository.RepositoryException: MPW1-UR-DEB-290: Checkout to revision 6e9d51bba91b8bf4e00149a7f125b8dc71639961 has failed.command /usr/bin/git submodule update --init --recursive failed with code 1. Working directory was [/home/bamboo/build-dir/131074/MPW1-UR-DEB/mpw1]., stderr:
error 14-apr-2016 20:53:27 Submodule 'IP/nfc' (ssh://git@192.168.2.90/nfc.git) registered for path 'IP/nfc'
error 14-apr-2016 20:53:27 Initialized empty Git repository in /home/bamboo/build-dir/131074/MPW1-UR-DEB/mpw1/IP/nfc/.git/
error 14-apr-2016 20:53:27 Warning: Permanently added '192.168.2.90' (RSA) to the list of known hosts.
error 14-apr-2016 20:53:27 Warning: Permanently added '192.168.2.90' (RSA) to the list of known hosts.
error 14-apr-2016 20:53:27 fatal: reference is not a tree: fcd5d1adb43d7df4497c729b66fc1780ee6715c4
error 14-apr-2016 20:53:27 Unable to checkout 'fcd5d1adb43d7df4497c729b66fc1780ee6715c4' in submodule path 'IP/nfc'
error 14-apr-2016 20:53:27 at com.atlassian.bamboo.executor.RetryingTaskExecutor.rerun(RetryingTaskExecutor.java:144)
error 14-apr-2016 20:53:27 at com.atlassian.bamboo.executor.RetryingTaskExecutor.runTask(RetryingTaskExecutor.java:88)
error 14-apr-2016 20:53:27 at com.atlassian.bamboo.executor.RetryingTaskExecutor.retry(RetryingTaskExecutor.java:203)
error 14-apr-2016 20:53:27 at com.atlassian.bamboo.executor.RetryingTaskExecutor.retry(RetryingTaskExecutor.java:188)
error 14-apr-2016 20:53:27 at com.atlassian.bamboo.plugins.vcs.task.VcsCheckoutTask.execute(VcsCheckoutTask.java:145)
error 14-apr-2016 20:53:27 at com.atlassian.bamboo.task.TaskExecutorImpl.lambda$executeTasks$121(TaskExecutorImpl.java:273)
error 14-apr-2016 20:53:27 at com.atlassian.bamboo.task.TaskExecutorImpl.executeTaskWithPrePostActions(TaskExecutorImpl.java:202)
error 14-apr-2016 20:53:27 at com.atlassian.bamboo.task.TaskExecutorImpl.executeTasks(TaskExecutorImpl.java:273)
error 14-apr-2016 20:53:27 at com.atlassian.bamboo.task.TaskExecutorImpl.executePreparationTasks(TaskExecutorImpl.java:83)
error 14-apr-2016 20:53:27 at com.atlassian.bamboo.build.pipeline.tasks.PrepareBuildTask.call(PrepareBuildTask.java:74)
error 14-apr-2016 20:53:27 at com.atlassian.bamboo.v2.build.agent.DefaultBuildAgent.build(DefaultBuildAgent.java:214)
error 14-apr-2016 20:53:27 at com.atlassian.bamboo.v2.build.agent.BuildAgentControllerImpl$1.call(BuildAgentControllerImpl.java:139)
error 14-apr-2016 20:53:27 at com.atlassian.bamboo.v2.build.agent.BuildAgentControllerImpl$1.call(BuildAgentControllerImpl.java:130)
error 14-apr-2016 20:53:27 at com.atlassian.bamboo.variable.CustomVariableContextImpl.withVariableSubstitutor(CustomVariableContextImpl.java:215)
error 14-apr-2016 20:53:27 at com.atlassian.bamboo.v2.build.agent.BuildAgentControllerImpl.waitAndPerformBuild(BuildAgentControllerImpl.java:129)
error 14-apr-2016 20:53:27 at com.atlassian.bamboo.v2.build.agent.DefaultBuildAgent$1.run(DefaultBuildAgent.java:136)
error 14-apr-2016 20:53:27 at com.atlassian.bamboo.utils.BambooRunnables$1.run(BambooRunnables.java:49)
error 14-apr-2016 20:53:27 at com.atlassian.bamboo.security.ImpersonationHelper.runWith(ImpersonationHelper.java:31)
error 14-apr-2016 20:53:27 at com.atlassian.bamboo.security.ImpersonationHelper.runWithSystemAuthority(ImpersonationHelper.java:20)
error 14-apr-2016 20:53:27 at com.atlassian.bamboo.security.ImpersonationHelper$1.run(ImpersonationHelper.java:52)
error 14-apr-2016 20:53:27 at java.lang.Thread.run(Thread.java:745)
error 14-apr-2016 20:53:27 Caused by: com.atlassian.bamboo.repository.RepositoryException: MPW1-UR-DEB-290: Checkout to revision 6e9d51bba91b8bf4e00149a7f125b8dc71639961 has failed.command /usr/bin/git submodule update --init --recursive failed with code 1. Working directory was [/home/bamboo/build-dir/131074/MPW1-UR-DEB/mpw1]., stderr:
error 14-apr-2016 20:53:27 Submodule 'IP/nfc' (ssh://git@192.168.2.90/nfc.git) registered for path 'IP/nfc'
error 14-apr-2016 20:53:27 Initialized empty Git repository in /home/bamboo/build-dir/131074/MPW1-UR-DEB/mpw1/IP/nfc/.git/
error 14-apr-2016 20:53:27 Warning: Permanently added '192.168.2.90' (RSA) to the list of known hosts.
error 14-apr-2016 20:53:27 Warning: Permanently added '192.168.2.90' (RSA) to the list of known hosts.
error 14-apr-2016 20:53:27 fatal: reference is not a tree: fcd5d1adb43d7df4497c729b66fc1780ee6715c4
error 14-apr-2016 20:53:27 Unable to checkout 'fcd5d1adb43d7df4497c729b66fc1780ee6715c4' in submodule path 'IP/nfc'
error 14-apr-2016 20:53:27 at com.atlassian.bamboo.plugins.git.NativeGitOperationHelper.checkout(NativeGitOperationHelper.java:368)
error 14-apr-2016 20:53:27 at com.atlassian.bamboo.plugins.git.GitRepository$2.call(GitRepository.java:479)
error 14-apr-2016 20:53:27 at com.atlassian.bamboo.plugins.git.GitRepository$2.call(GitRepository.java:446)
error 14-apr-2016 20:53:27 at com.atlassian.util.concurrent.ManagedLocks$ManagedLockImpl.withLock(ManagedLocks.java:312)
error 14-apr-2016 20:53:27 at com.atlassian.bamboo.plugins.git.GitRepository.retrieveSourceCode(GitRepository.java:445)
error 14-apr-2016 20:53:27 at com.atlassian.bamboo.plugins.vcs.task.VcsCheckoutTask.fillWorkingDirFromVcs(VcsCheckoutTask.java:273)
error 14-apr-2016 20:53:27 at com.atlassian.bamboo.plugins.vcs.task.VcsCheckoutTask.access$000(VcsCheckoutTask.java:57)
error 14-apr-2016 20:53:27 at com.atlassian.bamboo.plugins.vcs.task.VcsCheckoutTask$1.call(VcsCheckoutTask.java:150)
error 14-apr-2016 20:53:27 at com.atlassian.bamboo.plugins.vcs.task.VcsCheckoutTask$1.call(VcsCheckoutTask.java:146)
error 14-apr-2016 20:53:27 at com.atlassian.bamboo.executor.RetryingTaskExecutor.rerun(RetryingTaskExecutor.java:108)
error 14-apr-2016 20:53:27 ... 20 more
error 14-apr-2016 20:53:27 Caused by: com.atlassian.bamboo.plugins.git.GitCommandException: command /usr/bin/git submodule update --init --recursive failed with code 1. Working directory was [/home/bamboo/build-dir/131074/MPW1-UR-DEB/mpw1]., stderr:
error 14-apr-2016 20:53:27 Submodule 'IP/nfc' (ssh://git@192.168.2.90/nfc.git) registered for path 'IP/nfc'
error 14-apr-2016 20:53:27 Initialized empty Git repository in /home/bamboo/build-dir/131074/MPW1-UR-DEB/mpw1/IP/nfc/.git/
error 14-apr-2016 20:53:27 Warning: Permanently added '192.168.2.90' (RSA) to the list of known hosts.
error 14-apr-2016 20:53:27 Warning: Permanently added '192.168.2.90' (RSA) to the list of known hosts.
error 14-apr-2016 20:53:27 fatal: reference is not a tree: fcd5d1adb43d7df4497c729b66fc1780ee6715c4
error 14-apr-2016 20:53:27 Unable to checkout 'fcd5d1adb43d7df4497c729b66fc1780ee6715c4' in submodule path 'IP/nfc'
error 14-apr-2016 20:53:27 at com.atlassian.bamboo.plugins.git.GitCommandProcessor.runCommand(GitCommandProcessor.java:587)
error 14-apr-2016 20:53:27 at com.atlassian.bamboo.plugins.git.GitCommandProcessor.runCommand(GitCommandProcessor.java:530)
error 14-apr-2016 20:53:27 at com.atlassian.bamboo.plugins.git.GitCommandProcessor.runSubmoduleUpdateCommand(GitCommandProcessor.java:344)
error 14-apr-2016 20:53:27 at com.atlassian.bamboo.plugins.git.NativeGitOperationHelper.checkout(NativeGitOperationHelper.java:358)
error 14-apr-2016 20:53:27 ... 29 more
error 14-apr-2016 20:53:27 Failed to prepare the build 'MPW1 - Unit regressions - DEBUG #290 (MPW1-UR-DEB-290)'
simple 14-apr-2016 20:53:27 Running on server: post build plugin 'NCover Results Collector'
simple 14-apr-2016 20:53:27 Running on server: post build plugin 'Build Hanging Detection Configuration'
simple 14-apr-2016 20:53:27 Running on server: post build plugin 'Clover Delta Calculator'
simple 14-apr-2016 20:53:27 Running on server: post build plugin 'Maven Dependencies Postprocessor'
simple 14-apr-2016 20:53:27 All post build plugins have finished
simple 14-apr-2016 20:53:27 Generating build results summary...
simple 14-apr-2016 20:53:27 Saving build results to disk...
simple 14-apr-2016 20:53:27 Logging substituted variables...
simple 14-apr-2016 20:53:27 Indexing build results...
simple 14-apr-2016 20:53:27 Finished building MPW1-UR-DEB-290.

-------------------------------------

simple 15-apr-2016 00:19:27 Build MPW1 - Unit regressions - DEBUG #291 (MPW1-UR-DEB-291) started building on agent Test Agent
simple 15-apr-2016 00:19:27 Regressoin Test Agent
simple 15-apr-2016 00:19:27 Build working directory is /home/bamboo/build-dir/131074/MPW1-UR-DEB
simple 15-apr-2016 00:19:27 Executing build MPW1 - Unit regressions - DEBUG #291 (MPW1-UR-DEB-291)
simple 15-apr-2016 00:19:27 Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout'
simple 15-apr-2016 00:19:27 Updating source code to revision: 35748bb5a9c07ecdcfbc00dc90bb9e1392f1053c
simple 15-apr-2016 00:19:27 /usr/bin/git log -1 --encoding=UTF-8 --format=%H HEAD
simple 15-apr-2016 00:19:27 /usr/bin/git ls-remote ssh://git@192.168.2.90/mpw1.git
simple 15-apr-2016 00:19:28 Fetching 'refs/heads/develop' from 'ssh://git@192.168.2.90/mpw1.git'.
simple 15-apr-2016 00:19:28 /usr/bin/git fetch ssh://git@192.168.2.90/mpw1.git +refs/heads/develop:refs/heads/develop --update-head-ok --progress --verbose
simple 15-apr-2016 00:19:28 Warning: Permanently added '192.168.2.90' (RSA) to the list of known hosts.
simple 15-apr-2016 00:19:28 From ssh://192.168.2.90/mpw1
simple 15-apr-2016 00:19:28 = [up to date] develop -> develop
simple 15-apr-2016 00:19:28 /usr/bin/git log -1 --encoding=UTF-8 --format=%H 35748bb5a9c07ecdcfbc00dc90bb9e1392f1053c
simple 15-apr-2016 00:19:28 Checking out revision 35748bb5a9c07ecdcfbc00dc90bb9e1392f1053c.
simple 15-apr-2016 00:19:28 /usr/bin/git remote set-url origin file:///home/bamboo/build-dir/_git-repositories-cache/78f4640a8f3a38d7931eb981528e94b85d24f694
simple 15-apr-2016 00:19:28 /usr/bin/git show-ref develop
simple 15-apr-2016 00:19:28 /usr/bin/git checkout -f develop
simple 15-apr-2016 00:19:29 Previous HEAD position was 6e9d51b... [nfc]
simple 15-apr-2016 00:19:29 Branch develop set up to track remote branch develop from origin.
simple 15-apr-2016 00:19:29 Switched to a new branch 'develop'
simple 15-apr-2016 00:19:29 /usr/bin/git remote set-url origin ssh://git@192.168.2.90/mpw1.git
simple 15-apr-2016 00:19:29 /usr/bin/git submodule update --init --recursive
simple 15-apr-2016 00:19:29 Warning: Permanently added '192.168.2.90' (RSA) to the list of known hosts.
simple 15-apr-2016 00:19:30 Submodule path 'IP/common': checked out 'e021958b091e135f71d88cab041dbe193f714275'
simple 15-apr-2016 00:19:30 Initialized empty Git repository in /home/bamboo/build-dir/131074/MPW1-UR-DEB/mpw1/IP/pad_ctrl/.git/
simple 15-apr-2016 00:19:30 Warning: Permanently added '192.168.2.90' (RSA) to the list of known hosts.

error 15-apr-2016 00:21:21 mpw1/IP/top/config.mk:57: mpw1/IP/nfc/config.mk: No such file or firectory
error 15-apr-2016 00:21:21 make: *** make no rule to make target `mpw1/IP/nfc/config.mk'. Stop.
simple 15-apr-2016 00:21:21 Failing task since return code of [/bin/sh /opt/atlassian-bamboo-5.10.0/temp/MPW1-UR-DEB-291-ScriptBuildTask-6244525158990005713.sh] was 2 while expected 0
simple 15-apr-2016 00:21:21 Finished task 'Build testbench with MPW' with result: Failed
simple 15-apr-2016 00:21:21 Running post build plugin 'NCover Results Collector'
simple 15-apr-2016 00:21:21 Running post build plugin 'Artifact Copier'
simple 15-apr-2016 00:21:21 Running post build plugin 'npm Cache Cleanup'
simple 15-apr-2016 00:21:21 Running post build plugin 'Clover Results Collector'
simple 15-apr-2016 00:21:21 Running post build plugin 'Docker Container Cleanup'
simple 15-apr-2016 00:21:21 Finalising the build...
simple 15-apr-2016 00:21:21 Stopping timer.
simple 15-apr-2016 00:21:21 Build MPW1-UR-DEB-291 completed.
simple 15-apr-2016 00:21:21 Running on server: post build plugin 'NCover Results Collector'
simple 15-apr-2016 00:21:21 Running on server: post build plugin 'Build Hanging Detection Configuration'
simple 15-apr-2016 00:21:21 Running on server: post build plugin 'Clover Delta Calculator'
simple 15-apr-2016 00:21:21 Running on server: post build plugin 'Maven Dependencies Postprocessor'
simple 15-apr-2016 00:21:21 All post build plugins have finished
simple 15-apr-2016 00:21:21 Generating build results summary...
simple 15-apr-2016 00:21:21 Saving build results to disk...
simple 15-apr-2016 00:21:21 Logging substituted variables...
simple 15-apr-2016 00:21:21 Indexing build results...
simple 15-apr-2016 00:21:21 Finished building MPW1-UR-DEB-291.