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Details

Type: Bug
Resolution: Fixed
Priority: Medium
Fix Version/s: 6.7.0
Affects Version/s: 6.3.8.1
Component/s: None
Labels:
- affects-server
- fixme
- st10
- support

Introduced in Version:
6.03
Bug Fix Policy:
View Atlassian Server bug fix policy

Description

Summary

Attempting to index JIRA throws an exception when JIRA Agile (GreenHopper) is enabled.

Steps to Reproduce

Restore a "broken" data-set using the database backup (as XML restore fixes this).
Index JIRA.

Expected Results

It completes without error.

Actual Results

The index fails with the below exception:

java.util.concurrent.ExecutionException: java.lang.reflect.UndeclaredThrowableException
Task completed in 12 seconds with unexpected error.
Started Today 2:32 PM.
Finished Today 2:32 PM.
java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.reflect.UndeclaredThrowableException
	at com.atlassian.jira.index.FutureResult.await(FutureResult.java:35)
	at com.atlassian.jira.index.CompositeResultBuilder$CompositeResult.await(CompositeResultBuilder.java:82)
	at com.atlassian.jira.issue.index.DefaultIndexManager.doIndexIssuesInBatchMode(DefaultIndexManager.java:855)
	at com.atlassian.jira.issue.index.DefaultIndexManager.doStopTheWorldReindex(DefaultIndexManager.java:825)
	at com.atlassian.jira.issue.index.DefaultIndexManager.reIndexAll(DefaultIndexManager.java:335)
	at com.atlassian.jira.issue.index.DefaultIndexManager.reIndexAll(DefaultIndexManager.java:301)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at com.atlassian.util.profiling.object.ObjectProfiler.profiledInvoke(ObjectProfiler.java:81)
	at com.atlassian.jira.config.component.SwitchingInvocationHandler.invoke(SwitchingInvocationHandler.java:28)
	at $Proxy157.reIndexAll(Unknown Source)
	at com.atlassian.jira.util.index.CompositeIndexLifecycleManager.reIndexAll(CompositeIndexLifecycleManager.java:54)
	at com.atlassian.jira.web.action.admin.index.ReIndexAsyncIndexerCommand.doReindex(ReIndexAsyncIndexerCommand.java:28)
	at com.atlassian.jira.web.action.admin.index.AbstractAsyncIndexerCommand.call(AbstractAsyncIndexerCommand.java:54)
	at com.atlassian.jira.web.action.admin.index.ReIndexAsyncIndexerCommand.call(ReIndexAsyncIndexerCommand.java:16)
	at com.atlassian.jira.web.action.admin.index.AbstractAsyncIndexerCommand.call(AbstractAsyncIndexerCommand.java:23)
	at com.atlassian.jira.task.TaskManagerImpl$TaskCallableDecorator.call(TaskManagerImpl.java:366)
	at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
	at java.util.concurrent.FutureTask.run(FutureTask.java:138)
	at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441)
	at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
	at java.util.concurrent.FutureTask.run(FutureTask.java:138)
	at com.atlassian.multitenant.impl.DefaultMultiTenantManager.runForTenant(DefaultMultiTenantManager.java:61)
	at com.atlassian.multitenant.juc.MultiTenantExecutors$WrappedRunnable.run(MultiTenantExecutors.java:160)
	at com.atlassian.jira.task.ForkedThreadExecutor$ForkedRunnableDecorator.run(ForkedThreadExecutor.java:249)
	at java.lang.Thread.run(Thread.java:662)
Caused by: java.util.concurrent.ExecutionException: java.lang.reflect.UndeclaredThrowableException
	at java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:222)
	at java.util.concurrent.FutureTask.get(FutureTask.java:83)
	at com.atlassian.jira.index.FutureResult.await(FutureResult.java:31)
	... 27 more
Caused by: java.lang.reflect.UndeclaredThrowableException
	at $Proxy1775.getSprint(Unknown Source)
	at com.atlassian.greenhopper.customfield.sprint.SprintCFType.convertDbValueToType(SprintCFType.java:271)
	at com.atlassian.greenhopper.customfield.sprint.SprintCFType.convertDbValueToType(SprintCFType.java:42)
	at com.atlassian.jira.issue.customfields.impl.AbstractMultiCFType.convertDbObjectToTypes(AbstractMultiCFType.java:232)
	at com.atlassian.jira.issue.customfields.impl.AbstractMultiCFType.getValueFromIssue(AbstractMultiCFType.java:160)
	at com.atlassian.greenhopper.customfield.sprint.SprintCFType.getValueFromIssue(SprintCFType.java:231)
	at com.atlassian.greenhopper.customfield.sprint.SprintCFType.getValueFromIssue(SprintCFType.java:42)
	at com.atlassian.jira.issue.fields.CustomFieldImpl.getValue(CustomFieldImpl.java:384)
	at com.atlassian.greenhopper.customfield.sprint.SprintHistoryEntryFactory.getSprintChangeHistoryForIssue(SprintHistoryEntryFactory.java:133)
	at com.atlassian.greenhopper.customfield.sprint.SprintHistoryEntryFactory.getSprintChangeHistory(SprintHistoryEntryFactory.java:42)
	at com.atlassian.greenhopper.customfield.sprint.SprintCustomFieldIndexer.addDocumentFields(SprintCustomFieldIndexer.java:45)
	at com.atlassian.greenhopper.customfield.sprint.SprintCustomFieldIndexer.addDocumentFieldsSearchable(SprintCustomFieldIndexer.java:30)
	at com.atlassian.jira.issue.index.indexers.impl.AbstractCustomFieldIndexer.addIndex(AbstractCustomFieldIndexer.java:46)
	at com.atlassian.jira.issue.index.IssueDocument.getDocument(IssueDocument.java:40)
	at com.atlassian.jira.issue.index.DefaultIssueDocumentFactory.get(DefaultIssueDocumentFactory.java:15)
	at com.atlassian.jira.issue.index.DefaultIssueDocumentFactory.get(DefaultIssueDocumentFactory.java:11)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer$IssueLockDocumentCreationStrategy$2.get(DefaultIssueIndexer.java:598)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer$IssueLockDocumentCreationStrategy$2.get(DefaultIssueIndexer.java:593)
	at com.atlassian.util.concurrent.ManagedLocks$ManagedLockImpl.withLock(ManagedLocks.java:315)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer$IssueLockDocumentCreationStrategy.get(DefaultIssueIndexer.java:592)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer$IndexIssuesOperation.perform(DefaultIssueIndexer.java:446)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer$4$1.get(DefaultIssueIndexer.java:284)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer$4$1.get(DefaultIssueIndexer.java:280)
	at com.atlassian.jira.index.SimpleIndexingStrategy.get(SimpleIndexingStrategy.java:9)
	at com.atlassian.jira.index.SimpleIndexingStrategy.get(SimpleIndexingStrategy.java:5)
	at com.atlassian.jira.index.MultiThreadedIndexingStrategy$1.call(MultiThreadedIndexingStrategy.java:38)
	at com.atlassian.jira.index.MultiThreadedIndexingStrategy$1.call(MultiThreadedIndexingStrategy.java:35)
	at com.atlassian.jira.util.concurrent.BoundedExecutor$2.call(BoundedExecutor.java:70)
	at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
	at java.util.concurrent.FutureTask.run(FutureTask.java:138)
	at com.atlassian.multitenant.impl.DefaultMultiTenantManager.runForTenant(DefaultMultiTenantManager.java:61)
	at com.atlassian.multitenant.juc.MultiTenantExecutors$WrappedRunnable.run(MultiTenantExecutors.java:160)
	at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
	... 1 more
Caused by: java.lang.reflect.InvocationTargetException
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at com.atlassian.activeobjects.tx.TransactionalProxy.invoke(TransactionalProxy.java:79)
	at com.atlassian.activeobjects.tx.TransactionalProxy.invoke(TransactionalProxy.java:39)
	... 35 more
Caused by: com.atlassian.util.concurrent.LazyReference$InitializationException: java.lang.NullPointerException
	at com.atlassian.util.concurrent.LazyReference.getInterruptibly(LazyReference.java:152)
	at com.atlassian.util.concurrent.LazyReference.get(LazyReference.java:115)
	at com.atlassian.util.concurrent.ResettableLazyReference.get(ResettableLazyReference.java:89)
	at com.atlassian.greenhopper.service.sprint.SprintManagerImpl.getSprint(SprintManagerImpl.java:68)
	... 41 more
Caused by: java.lang.NullPointerException
	at com.google.common.base.Preconditions.checkNotNull(Preconditions.java:187)
	at com.google.common.collect.SingletonImmutableList.<init>(SingletonImmutableList.java:41)
	at com.google.common.collect.ImmutableList.of(ImmutableList.java:80)
	at net.java.ao.DatabaseProvider.renderAction(DatabaseProvider.java:244)
	at net.java.ao.schema.SchemaGenerator$1.apply(SchemaGenerator.java:117)
	at net.java.ao.schema.SchemaGenerator$1.apply(SchemaGenerator.java:114)
	at com.google.common.collect.Iterators$8.next(Iterators.java:782)
	at net.java.ao.schema.SchemaGenerator.migrate(SchemaGenerator.java:92)
	at net.java.ao.EntityManager.migrate(EntityManager.java:133)
	at com.atlassian.activeobjects.internal.EntityManagedActiveObjects.migrate(EntityManagedActiveObjects.java:43)
	at com.atlassian.activeobjects.internal.AbstractActiveObjectsFactory.create(AbstractActiveObjectsFactory.java:52)
	at com.atlassian.activeobjects.internal.DelegatingActiveObjectsFactory.create(DelegatingActiveObjectsFactory.java:39)
	at com.atlassian.activeobjects.osgi.ActiveObjectsServiceFactory.createActiveObjects(ActiveObjectsServiceFactory.java:136)
	at com.atlassian.activeobjects.osgi.ActiveObjectsServiceFactory.access$000(ActiveObjectsServiceFactory.java:51)
	at com.atlassian.activeobjects.osgi.ActiveObjectsServiceFactory$1$1.get(ActiveObjectsServiceFactory.java:65)
	at com.atlassian.activeobjects.osgi.ActiveObjectsServiceFactory$1$1.get(ActiveObjectsServiceFactory.java:61)
	at com.atlassian.activeobjects.osgi.DelegatingActiveObjects$MemoizingSupplier.get(DelegatingActiveObjects.java:149)
	at com.atlassian.activeobjects.osgi.DelegatingActiveObjects.find(DelegatingActiveObjects.java:76)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
	at org.springframework.osgi.service.importer.support.internal.aop.ServiceInvoker.doInvoke(ServiceInvoker.java:58)
	at org.springframework.osgi.service.importer.support.internal.aop.ServiceInvoker.invoke(ServiceInvoker.java:62)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171)
	at org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:131)
	at org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:119)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171)
	at org.springframework.osgi.service.util.internal.aop.ServiceTCCLInterceptor.invokeUnprivileged(ServiceTCCLInterceptor.java:56)
	at org.springframework.osgi.service.util.internal.aop.ServiceTCCLInterceptor.invoke(ServiceTCCLInterceptor.java:39)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171)
	at org.springframework.osgi.service.importer.support.LocalBundleContextAdvice.invoke(LocalBundleContextAdvice.java:59)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171)
	at org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:131)
	at org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:119)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171)
	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:204)
	at $Proxy1764.find(Unknown Source)
	at com.atlassian.greenhopper.service.sprint.SprintDao.loadAll(SprintDao.java:11)
	at com.atlassian.greenhopper.service.sprint.SprintManagerImpl$1.create(SprintManagerImpl.java:52)
	at com.atlassian.greenhopper.service.sprint.SprintManagerImpl$1.create(SprintManagerImpl.java:48)
	at com.atlassian.util.concurrent.ResettableLazyReference$InternalReference.create(ResettableLazyReference.java:143)
	at com.atlassian.util.concurrent.LazyReference$Sync.run(LazyReference.java:326)
	at com.atlassian.util.concurrent.LazyReference.getInterruptibly(LazyReference.java:146)
	... 44 more

OR

java.lang.RuntimeException: java.util.concurrent.ExecutionException: java.lang.NullPointerException
	at com.atlassian.jira.index.FutureResult.await(FutureResult.java:35)
	at com.atlassian.jira.index.CompositeResultBuilder$CompositeResult.await(CompositeResultBuilder.java:82)
	at com.atlassian.jira.issue.index.DefaultIndexManager.doIndexIssuesInBatchMode(DefaultIndexManager.java:857)
	at com.atlassian.jira.issue.index.DefaultIndexManager.doStopTheWorldReindex(DefaultIndexManager.java:827)
	at com.atlassian.jira.issue.index.DefaultIndexManager.reIndexAll(DefaultIndexManager.java:337)
	at com.atlassian.jira.issue.index.DefaultIndexManager.reIndexAll(DefaultIndexManager.java:303)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
	at java.lang.reflect.Method.invoke(Unknown Source)
	at com.atlassian.util.profiling.object.ObjectProfiler.profiledInvoke(ObjectProfiler.java:83)
	at com.atlassian.jira.config.component.SwitchingInvocationHandler.invoke(SwitchingInvocationHandler.java:28)
	at com.sun.proxy.$Proxy129.reIndexAll(Unknown Source)
	at com.atlassian.jira.util.index.CompositeIndexLifecycleManager.reIndexAll(CompositeIndexLifecycleManager.java:56)
	at com.atlassian.jira.web.action.admin.index.ReIndexAsyncIndexerCommand.doReindex(ReIndexAsyncIndexerCommand.java:28)
	at com.atlassian.jira.web.action.admin.index.AbstractAsyncIndexerCommand.call(AbstractAsyncIndexerCommand.java:54)
	at com.atlassian.jira.web.action.admin.index.ReIndexAsyncIndexerCommand.call(ReIndexAsyncIndexerCommand.java:16)
	at com.atlassian.jira.web.action.admin.index.AbstractAsyncIndexerCommand.call(AbstractAsyncIndexerCommand.java:23)
	at com.atlassian.jira.task.TaskManagerImpl$TaskCallableDecorator.call(TaskManagerImpl.java:365)
	at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source)
	at java.util.concurrent.FutureTask.run(Unknown Source)
	at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source)
	at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source)
	at java.util.concurrent.FutureTask.run(Unknown Source)
	at com.atlassian.jira.task.ForkedThreadExecutor$ForkedRunnableDecorator.run(ForkedThreadExecutor.java:249)
	at java.lang.Thread.run(Unknown Source)
Caused by: java.util.concurrent.ExecutionException: java.lang.NullPointerException
	at java.util.concurrent.FutureTask$Sync.innerGet(Unknown Source)
	at java.util.concurrent.FutureTask.get(Unknown Source)
	at com.atlassian.jira.index.FutureResult.await(FutureResult.java:31)
	... 25 more
Caused by: java.lang.NullPointerException
	at com.atlassian.jira.issue.customfields.impl.AbstractMultiCFType.getValueFromIssue(AbstractMultiCFType.java:159)
	at com.atlassian.greenhopper.customfield.sprint.SprintCFType.getValueFromIssue(SprintCFType.java:235)
	at com.atlassian.greenhopper.customfield.sprint.SprintCFType.getValueFromIssue(SprintCFType.java:42)
	at com.atlassian.jira.issue.fields.CustomFieldImpl.getValue(CustomFieldImpl.java:395)
	at com.atlassian.greenhopper.customfield.sprint.SprintHistoryEntryFactory.getSprintChangeHistoryForIssue(SprintHistoryEntryFactory.java:134)
	at com.atlassian.greenhopper.customfield.sprint.SprintHistoryEntryFactory.getSprintChangeHistory(SprintHistoryEntryFactory.java:54)
	at com.atlassian.greenhopper.customfield.sprint.SprintCustomFieldIndexer.addDocumentFields(SprintCustomFieldIndexer.java:45)
	at com.atlassian.greenhopper.customfield.sprint.SprintCustomFieldIndexer.addDocumentFieldsSearchable(SprintCustomFieldIndexer.java:30)
	at com.atlassian.jira.issue.index.indexers.impl.AbstractCustomFieldIndexer.addIndex(AbstractCustomFieldIndexer.java:46)
	at com.atlassian.jira.issue.index.IssueDocument.getDocument(IssueDocument.java:41)
	at com.atlassian.jira.issue.index.DefaultIssueDocumentFactory.get(DefaultIssueDocumentFactory.java:15)
	at com.atlassian.jira.issue.index.DefaultIssueDocumentFactory.get(DefaultIssueDocumentFactory.java:11)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer$IssueLockDocumentCreationStrategy$2.get(DefaultIssueIndexer.java:598)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer$IssueLockDocumentCreationStrategy$2.get(DefaultIssueIndexer.java:593)
	at com.atlassian.util.concurrent.ManagedLocks$ManagedLockImpl.withLock(ManagedLocks.java:303)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer$IssueLockDocumentCreationStrategy.get(DefaultIssueIndexer.java:592)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer$IndexIssuesOperation.perform(DefaultIssueIndexer.java:446)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer$4$1.get(DefaultIssueIndexer.java:284)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer$4$1.get(DefaultIssueIndexer.java:280)
	at com.atlassian.jira.index.SimpleIndexingStrategy.get(SimpleIndexingStrategy.java:9)
	at com.atlassian.jira.index.SimpleIndexingStrategy.get(SimpleIndexingStrategy.java:5)
	at com.atlassian.jira.index.MultiThreadedIndexingStrategy$1.call(MultiThreadedIndexingStrategy.java:38)
	at com.atlassian.jira.index.MultiThreadedIndexingStrategy$1.call(MultiThreadedIndexingStrategy.java:35)
	at com.atlassian.jira.util.concurrent.BoundedExecutor$2.call(BoundedExecutor.java:69)
	at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source)
	at java.util.concurrent.FutureTask.run(Unknown Source)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
	... 1 more

Workaround

To workaround this:

Step 1

Disable JIRA Agile (GreenHopper) from 'Manage Add-ons'.
Re-index data (this will succeed).
Run the Database Integrity Checker and resolve all the errors shown.
Re-enable JIRA Agile (GreenHopper).
Re-index again (full re-index).

Step 2 (if Step 1 does not resolve the issue)

Create a new database and point JIRA to this db.
Import a latest XML backup.

Notes

The second stack trace is caused by the issue being passed to getValueFromIssue in AbstractMultiCFType (in JIRA) being null. This is called from JIRA Agile's SprintCFType.getValueFromIssue method which checks for issue being a subtask first, so if the issue itself were null, it would have broken inside JIRA Agile code. It would appear that somehow sub-tasks are getting orphaned from their parent and this would cause these symptoms to occur.

Attachments

Issue Links

relates to

JRASERVER-31734 NPE error when moving issue with subtask in case target project has a different workflow for the subtask

Closed

JRASERVER-36684 Sub-tasks not moved with parent issues to other projects

Closed

JRASERVER-29630 Sub-Tasks Not Using Assigned Workflow When Moving Parent Issue To Another Project

Closed

is caused by: AO-554 Loading...

mentioned in: Page Loading...; Page Loading...

(1 mentioned in)

Attempting to Index with JIRA Agile(GreenHopper) enabled throws a UndeclaredThrowableException or a NullPointerException