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Details

Type: Bug
Resolution: Tracked Elsewhere
Priority: High
Fix Version/s: None
Affects Version/s: 6.3.7
Component/s: None
Labels:
- affects-server

Introduced in Version:
6.03
Bug Fix Policy:
View Atlassian Server bug fix policy

Description

Summary

When attempting to upgrade JIRA Agile using a certain data-set it fails on Java 7 with the below exception.

Environment

Java 7.

Steps to Reproduce

Restore an instance with problematic data.
Install JIRA Agile and upgrade.

Expected Results

The upgrade performs flawlessly.

Actual Results

The upgrade fails with the below exception in the logs during startup:

2014-01-30 21:08:49,834 UpmAsynchronousTaskManager:thread-3 ERROR admin 1268x364x2 1xv06zp 85.197.29.161,127.0.0.1 /rest/plugins/1.0/ [sal.core.upgrade.PluginUpgrader] Upgrade failed: Comparison method violates its general contract!
java.lang.IllegalArgumentException: Comparison method violates its general contract!
	at java.util.ComparableTimSort.mergeLo(Unknown Source)
	at java.util.ComparableTimSort.mergeAt(Unknown Source)
	at java.util.ComparableTimSort.mergeForceCollapse(Unknown Source)
	at java.util.ComparableTimSort.sort(Unknown Source)
	at java.util.ComparableTimSort.sort(Unknown Source)
	at java.util.Arrays.sort(Unknown Source)
	at java.util.Collections.sort(Unknown Source)
	at com.atlassian.jira.issue.index.DefaultChangeHistoryRetriever.createChangeGroupsFromChangeItems(DefaultChangeHistoryRetriever.java:57)
	at com.atlassian.jira.issue.index.DefaultChangeHistoryRetriever.get(DefaultChangeHistoryRetriever.java:49)
	at com.atlassian.jira.issue.index.DefaultChangeHistoryRetriever.get(DefaultChangeHistoryRetriever.java:27)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer$ChangeHistoryDocumentBuilder.get(DefaultIssueIndexer.java:575)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer$IssueLockDocumentCreationStrategy$2.get(DefaultIssueIndexer.java:605)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer$IssueLockDocumentCreationStrategy$2.get(DefaultIssueIndexer.java:601)
	at com.atlassian.util.concurrent.ManagedLocks$ManagedLockImpl.withLock(ManagedLocks.java:303)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer$IssueLockDocumentCreationStrategy.get(DefaultIssueIndexer.java:600)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer$2.perform(DefaultIssueIndexer.java:164)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer$4$1.get(DefaultIssueIndexer.java:292)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer$4$1.get(DefaultIssueIndexer.java:288)
	at com.atlassian.jira.index.SimpleIndexingStrategy.get(SimpleIndexingStrategy.java:9)
	at com.atlassian.jira.index.SimpleIndexingStrategy.get(SimpleIndexingStrategy.java:5)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer$4.consume(DefaultIssueIndexer.java:287)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer$4.consume(DefaultIssueIndexer.java:279)
	at com.atlassian.jira.util.collect.CollectionUtil.foreach(CollectionUtil.java:44)
	at com.atlassian.greenhopper.upgrade.IssueIdsIssueIterable.foreach(IssueIdsIssueIterable.java:32)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer.perform(DefaultIssueIndexer.java:278)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer.reindexIssues(DefaultIssueIndexer.java:159)
	at com.atlassian.jira.issue.index.DefaultIndexManager.reIndexIssues(DefaultIndexManager.java:470)
	at com.atlassian.jira.issue.index.DefaultIndexManager.reIndexIssues(DefaultIndexManager.java:437)
	at com.atlassian.jira.issue.index.DefaultIndexManager.reIndexIssues(DefaultIndexManager.java:430)  <+3>
	at java.lang.reflect.Method.invoke(Unknown Source)
	at com.atlassian.util.profiling.object.ObjectProfiler.profiledInvoke(ObjectProfiler.java:83)
	at com.atlassian.jira.config.component.SwitchingInvocationHandler.invoke(SwitchingInvocationHandler.java:28)
	at com.sun.proxy.$Proxy137.reIndexIssues(Unknown Source)  <+3>
	at java.lang.reflect.Method.invoke(Unknown Source)
	at com.atlassian.plugin.osgi.hostcomponents.impl.DefaultComponentRegistrar$ContextClassLoaderSettingInvocationHandler.invoke(DefaultComponentRegistrar.java:129)
	at com.sun.proxy.$Proxy137.reIndexIssues(Unknown Source)  <+3>
	at java.lang.reflect.Method.invoke(Unknown Source)
	at com.atlassian.plugin.osgi.bridge.external.HostComponentFactoryBean$DynamicServiceInvocationHandler.invoke(HostComponentFactoryBean.java:154)
	at com.sun.proxy.$Proxy137.reIndexIssues(Unknown Source)
	at com.atlassian.greenhopper.upgrade.GhUpgradeTask041.reindexUpdatedIssues(GhUpgradeTask041.java:164)
	at com.atlassian.greenhopper.upgrade.GhUpgradeTask041.performUpgrade(GhUpgradeTask041.java:110)
	at com.atlassian.greenhopper.upgrade.AbstractGhUpgradeTask.doUpgrade(AbstractGhUpgradeTask.java:62)  <+3>
	at java.lang.reflect.Method.invoke(Unknown Source)
	at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
	at org.springframework.osgi.service.importer.support.internal.aop.ServiceInvoker.doInvoke(ServiceInvoker.java:58)
	at org.springframework.osgi.service.importer.support.internal.aop.ServiceInvoker.invoke(ServiceInvoker.java:62)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171)
	at org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:131)
	at org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:119)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171)
	at org.springframework.osgi.service.util.internal.aop.ServiceTCCLInterceptor.invokeUnprivileged(ServiceTCCLInterceptor.java:56)
	at org.springframework.osgi.service.util.internal.aop.ServiceTCCLInterceptor.invoke(ServiceTCCLInterceptor.java:39)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171)
	at org.springframework.osgi.service.importer.support.LocalBundleContextAdvice.invoke(LocalBundleContextAdvice.java:59)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171)
	at org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:131)
	at org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:119)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171)
	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:204)
	at com.sun.proxy.$Proxy613.doUpgrade(Unknown Source)
	at com.atlassian.sal.core.upgrade.PluginUpgrader.doUpgrade(PluginUpgrader.java:85)
	at com.atlassian.sal.core.upgrade.PluginUpgrader.upgrade(PluginUpgrader.java:66)
	at com.atlassian.sal.core.upgrade.DefaultPluginUpgradeManager.upgradePlugin(DefaultPluginUpgradeManager.java:204)
	at com.atlassian.sal.core.upgrade.DefaultPluginUpgradeManager.upgradeInternal(DefaultPluginUpgradeManager.java:194)
	at com.atlassian.sal.core.upgrade.DefaultPluginUpgradeManager$2.doInTransaction(DefaultPluginUpgradeManager.java:178)
	at com.atlassian.sal.core.transaction.HostContextTransactionTemplate$1.doInTransaction(HostContextTransactionTemplate.java:25)
	at com.atlassian.jira.DefaultHostContextAccessor.doInTransaction(DefaultHostContextAccessor.java:34)  <+2>
	at java.lang.reflect.Method.invoke(Unknown Source)
	at com.atlassian.plugin.osgi.hostcomponents.impl.DefaultComponentRegistrar$ContextClassLoaderSettingInvocationHandler.invoke(DefaultComponentRegistrar.java:129)
	at com.sun.proxy.$Proxy438.doInTransaction(Unknown Source)  <+2>
	at java.lang.reflect.Method.invoke(Unknown Source)
	at com.atlassian.plugin.osgi.bridge.external.HostComponentFactoryBean$DynamicServiceInvocationHandler.invoke(HostComponentFactoryBean.java:154)
	at com.sun.proxy.$Proxy438.doInTransaction(Unknown Source)
	at com.atlassian.sal.core.transaction.HostContextTransactionTemplate.execute(HostContextTransactionTemplate.java:21)
	at com.atlassian.sal.core.upgrade.DefaultPluginUpgradeManager.upgradeInTransaction(DefaultPluginUpgradeManager.java:174)
	at com.atlassian.sal.core.upgrade.DefaultPluginUpgradeManager.onPluginEnabled(DefaultPluginUpgradeManager.java:95)  <+2>
	at java.lang.reflect.Method.invoke(Unknown Source)
	at com.atlassian.event.internal.SingleParameterMethodListenerInvoker.invoke(SingleParameterMethodListenerInvoker.java:36)
	at com.atlassian.event.internal.AsynchronousAbleEventDispatcher$2.run(AsynchronousAbleEventDispatcher.java:66)
	at com.atlassian.event.internal.AsynchronousAbleEventDispatcher$1.execute(AsynchronousAbleEventDispatcher.java:32)
	at com.atlassian.event.internal.AsynchronousAbleEventDispatcher.dispatch(AsynchronousAbleEventDispatcher.java:60)
	at com.atlassian.event.internal.EventPublisherImpl.invokeListeners(EventPublisherImpl.java:160)
	at com.atlassian.event.internal.EventPublisherImpl.publish(EventPublisherImpl.java:79)
	at com.atlassian.plugin.event.impl.DefaultPluginEventManager.broadcast(DefaultPluginEventManager.java:84)
	at com.atlassian.plugin.manager.DefaultPluginManager.addPlugins(DefaultPluginManager.java:819)
	at com.atlassian.plugin.manager.DefaultPluginManager.scanForNewPlugins(DefaultPluginManager.java:523)
	at com.atlassian.plugin.manager.DefaultPluginManager.installPlugins(DefaultPluginManager.java:426)
	at com.atlassian.jira.plugin.JiraPluginManager.installPlugins(JiraPluginManager.java:109)  <+3>
	at java.lang.reflect.Method.invoke(Unknown Source)
	at com.atlassian.plugin.osgi.hostcomponents.impl.DefaultComponentRegistrar$ContextClassLoaderSettingInvocationHandler.invoke(DefaultComponentRegistrar.java:129)
	at com.sun.proxy.$Proxy527.installPlugins(Unknown Source)  <+3>
	at java.lang.reflect.Method.invoke(Unknown Source)
	at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
	at org.springframework.osgi.service.importer.support.internal.aop.ServiceInvoker.doInvoke(ServiceInvoker.java:58)
	at org.springframework.osgi.service.importer.support.internal.aop.ServiceInvoker.invoke(ServiceInvoker.java:62)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171)
	at org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:131)
	at org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:119)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171)
	at org.springframework.osgi.service.util.internal.aop.ServiceTCCLInterceptor.invokeUnprivileged(ServiceTCCLInterceptor.java:56)
	at org.springframework.osgi.service.util.internal.aop.ServiceTCCLInterceptor.invoke(ServiceTCCLInterceptor.java:39)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171)
	at org.springframework.osgi.service.importer.support.LocalBundleContextAdvice.invoke(LocalBundleContextAdvice.java:59)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171)
	at org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:131)
	at org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:119)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171)
	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:204)
	at com.sun.proxy.$Proxy1578.installPlugins(Unknown Source)
	at com.atlassian.upm.manager.install.PluginArtifactInstallerImpl$1.doInTransaction(PluginArtifactInstallerImpl.java:56)
	at com.atlassian.upm.manager.install.PluginArtifactInstallerImpl$1.doInTransaction(PluginArtifactInstallerImpl.java:51)
	at com.atlassian.sal.core.transaction.HostContextTransactionTemplate$1.doInTransaction(HostContextTransactionTemplate.java:25)
	at com.atlassian.jira.DefaultHostContextAccessor.doInTransaction(DefaultHostContextAccessor.java:34)  <+2>
	at java.lang.reflect.Method.invoke(Unknown Source)
	at com.atlassian.plugin.osgi.hostcomponents.impl.DefaultComponentRegistrar$ContextClassLoaderSettingInvocationHandler.invoke(DefaultComponentRegistrar.java:129)
	at com.sun.proxy.$Proxy438.doInTransaction(Unknown Source)  <+2>
	at java.lang.reflect.Method.invoke(Unknown Source)
	at com.atlassian.plugin.osgi.bridge.external.HostComponentFactoryBean$DynamicServiceInvocationHandler.invoke(HostComponentFactoryBean.java:154)
	at com.sun.proxy.$Proxy438.doInTransaction(Unknown Source)
	at com.atlassian.sal.core.transaction.HostContextTransactionTemplate.execute(HostContextTransactionTemplate.java:21)  <+2>
	at java.lang.reflect.Method.invoke(Unknown Source)
	at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
	at org.springframework.osgi.service.importer.support.internal.aop.ServiceInvoker.doInvoke(ServiceInvoker.java:58)
	at org.springframework.osgi.service.importer.support.internal.aop.ServiceInvoker.invoke(ServiceInvoker.java:62)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171)
	at org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:131)
	at org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:119)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171)
	at org.springframework.osgi.service.util.internal.aop.ServiceTCCLInterceptor.invokeUnprivileged(ServiceTCCLInterceptor.java:56)
	at org.springframework.osgi.service.util.internal.aop.ServiceTCCLInterceptor.invoke(ServiceTCCLInterceptor.java:39)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171)
	at org.springframework.osgi.service.importer.support.LocalBundleContextAdvice.invoke(LocalBundleContextAdvice.java:59)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171)
	at org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:131)
	at org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:119)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171)
	at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:204)
	at com.sun.proxy.$Proxy1564.execute(Unknown Source)
	at com.atlassian.upm.manager.install.PluginArtifactInstallerImpl.installPlugins(PluginArtifactInstallerImpl.java:50)
	at com.atlassian.upm.manager.install.AbstractPluginInstallHandler.installSingleArtifact(AbstractPluginInstallHandler.java:95)
	at com.atlassian.upm.manager.install.JarPluginInstallHandler.installPluginInternal(JarPluginInstallHandler.java:47)
	at com.atlassian.upm.manager.install.AbstractPluginInstallHandler.installPlugin(AbstractPluginInstallHandler.java:50)
	at com.atlassian.upm.manager.PluginInstallationServiceImpl.installPlugin(PluginInstallationServiceImpl.java:86)
	at com.atlassian.upm.manager.PluginInstaller.execute(PluginInstaller.java:141)
	at com.atlassian.upm.manager.PluginInstaller.install(PluginInstaller.java:96)
	at com.atlassian.upm.rest.resources.install.InstallTask.installFromFile(InstallTask.java:127)
	at com.atlassian.upm.rest.resources.install.InstallFromUriTask.executeTask(InstallFromUriTask.java:90)
	at com.atlassian.upm.rest.resources.install.InstallTask.call(InstallTask.java:63)
	at com.atlassian.upm.rest.resources.install.InstallTask.call(InstallTask.java:33)
	at com.atlassian.upm.rest.async.AsynchronousTaskManager$1.call(AsynchronousTaskManager.java:77)
	at com.atlassian.upm.rest.async.AsynchronousTaskManager$1.call(AsynchronousTaskManager.java:72)
	at com.atlassian.sal.core.executor.ThreadLocalDelegateCallable.call(ThreadLocalDelegateCallable.java:42)
	at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source)
	at java.util.concurrent.FutureTask.run(Unknown Source)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
	at java.lang.Thread.run(Unknown Source)

Workaround

Stop JIRA.
Switch to Java 6 (we are aware this is no longer supported, however can be used to workaround this problem).
Start JIRA.
Let the upgrade complete.
Stop JIRA, switch back to Java 7 and restart.

Attachments

Issue Links

is caused by

JRASERVER-36857 Reindex all fails with an com.atlassian.jira.index.IndexingFailureException using Java 7

Closed

JRASERVER-37822 Reindex all fails with an com.atlassian.jira.index.IndexingFailureException using Java 7

Closed

JDEV-27633 Loading...

Attempting to upgrade JIRA Agile fails with java.lang.IllegalArgumentException: Comparison method violates its general contract!