Reloading plugins during background reindex can cause the index to fail

2013-07-10 22:45:46,750 Timer-2 INFO      [atlassian.servicedesk.lifecycle.LoggingSupport] 

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Atlassian ServiceDesk v1.0-m38-SNAPSHOT #cab26d07 built 2013-07-10T09:08:37.650Z - stopping...
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2013-07-10 22:45:46,753 Timer-2 INFO      [atlassian.servicedesk.lifecycle.LoggingSupport] 

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Atlassian ServiceDesk v1.0-m38-SNAPSHOT #cab26d07 built 2013-07-10T09:08:37.650Z - stopped
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2013-07-10 22:45:46,888 JiraTaskExectionThread-1 ERROR tcampbell 1354x4282x2 15lvp3c 59.167.133.100,131.103.27.209 /secure/admin/jira/IndexReIndex.jspa [jira.issue.managers.DefaultCustomFieldManager] Could not load custom field type plugin with key 'com.atlassian.servicedesk:vp-origin'. Is the plugin present and enabled?
2013-07-10 22:45:46,910 JiraTaskExectionThread-1 ERROR tcampbell 1354x4282x2 15lvp3c 59.167.133.100,131.103.27.209 /secure/admin/jira/IndexReIndex.jspa [jira.issue.managers.DefaultCustomFieldManager] Could not load custom field type plugin with key 'com.atlassian.servicedesk:sd-first-comment-response'. Is the plugin present and enabled?
2013-07-10 22:45:46,916 JiraTaskExectionThread-1 ERROR tcampbell 1354x4282x2 15lvp3c 59.167.133.100,131.103.27.209 /secure/admin/jira/IndexReIndex.jspa [jira.issue.managers.DefaultCustomFieldManager] Could not load custom field type plugin with key 'com.atlassian.agmp.jira-gdocs-customfield:googledoc-field'. Is the plugin present and enabled?
2013-07-10 22:45:47,039 JiraTaskExectionThread-1 ERROR tcampbell 1354x4282x2 15lvp3c 59.167.133.100,131.103.27.209 /secure/admin/jira/IndexReIndex.jspa [jira.issue.managers.DefaultCustomFieldManager] Could not load custom field type plugin with key 'com.atlassian.servicedesk:sd-time-til-resolved'. Is the plugin present and enabled?
2013-07-10 22:45:47,056 JiraTaskExectionThread-1 ERROR tcampbell 1354x4282x2 15lvp3c 59.167.133.100,131.103.27.209 /secure/admin/jira/IndexReIndex.jspa [jira.issue.managers.DefaultCustomFieldManager] Could not load custom field type plugin with key 'com.atlassian.viewport:vp-origin'. Is the plugin present and enabled?
2013-07-10 22:45:47,061 JiraTaskExectionThread-1 ERROR tcampbell 1354x4282x2 15lvp3c 59.167.133.100,131.103.27.209 /secure/admin/jira/IndexReIndex.jspa [jira.issue.managers.DefaultCustomFieldManager] Could not load custom field type plugin with key 'com.atlassian.servicedesk:vp-origin'. Is the plugin present and enabled?
2013-07-10 22:45:47,069 JiraTaskExectionThread-1 ERROR tcampbell 1354x4282x2 15lvp3c 59.167.133.100,131.103.27.209 /secure/admin/jira/IndexReIndex.jspa [jira.issue.managers.DefaultCustomFieldManager] Could not load custom field type plugin with key 'com.atlassian.servicedesk:vp-origin'. Is the plugin present and enabled?
2013-07-10 22:45:47,069 JiraTaskExectionThread-1 ERROR tcampbell 1354x4282x2 15lvp3c 59.167.133.100,131.103.27.209 /secure/admin/jira/IndexReIndex.jspa [jira.issue.managers.DefaultCustomFieldManager] Could not load custom field type plugin with key 'com.atlassian.servicedesk:sd-first-comment-response'. Is the plugin present and enabled?
2013-07-10 22:45:47,070 JiraTaskExectionThread-1 ERROR tcampbell 1354x4282x2 15lvp3c 59.167.133.100,131.103.27.209 /secure/admin/jira/IndexReIndex.jspa [jira.issue.managers.DefaultCustomFieldManager] Could not load custom field type plugin with key 'com.atlassian.agmp.jira-gdocs-customfield:googledoc-field'. Is the plugin present and enabled?
2013-07-10 22:45:47,070 JiraTaskExectionThread-1 ERROR tcampbell 1354x4282x2 15lvp3c 59.167.133.100,131.103.27.209 /secure/admin/jira/IndexReIndex.jspa [jira.issue.managers.DefaultCustomFieldManager] Could not load custom field type plugin with key 'com.atlassian.servicedesk:sd-time-til-resolved'. Is the plugin present and enabled?
2013-07-10 22:45:47,071 JiraTaskExectionThread-1 ERROR tcampbell 1354x4282x2 15lvp3c 59.167.133.100,131.103.27.209 /secure/admin/jira/IndexReIndex.jspa [jira.issue.managers.DefaultCustomFieldManager] Could not load custom field type plugin with key 'com.atlassian.viewport:vp-origin'. Is the plugin present and enabled?
2013-07-10 22:45:47,071 JiraTaskExectionThread-1 ERROR tcampbell 1354x4282x2 15lvp3c 59.167.133.100,131.103.27.209 /secure/admin/jira/IndexReIndex.jspa [jira.issue.managers.DefaultCustomFieldManager] Could not load custom field type plugin with key 'com.atlassian.servicedesk:vp-origin'. Is the plugin present and enabled?
2013-07-10 22:45:47,107 pool-12-thread-2 INFO gdavidson 1365x5422x1 2jwhdb 131.103.28.251,131.103.27.209 /rest/plugins/1.0/ [atlassian.plugin.loaders.ScanningPluginLoader] Removed plugin com.atlassian.servicedesk
2013-07-10 22:45:48,051 JiraTaskExectionThread-1 INFO tcampbell 1354x4282x2 15lvp3c 59.167.133.100,131.103.27.209 /secure/admin/jira/IndexReIndex.jspa [fields.layout.field.AbstractFieldLayoutManager] Field layout contains non-orderable field with id 'customfield_16350'.
2013-07-10 22:45:48,132 pool-12-thread-2 INFO gdavidson 1365x5422x1 2jwhdb 131.103.28.251,131.103.27.209 /rest/plugins/1.0/ [atlassian.plugin.util.WaitUntil] Plugins that have yet to be enabled: [com.atlassian.servicedesk], 600 seconds remaining
2013-07-10 22:45:48,181 JiraTaskExectionThread-1 ERROR tcampbell 1354x4282x2 15lvp3c 59.167.133.100,131.103.27.209 /secure/admin/jira/IndexReIndex.jspa [jira.util.index.CompositeIndexLifecycleManager] Reindex All In Background FAILED. Indexer: DefaultIndexManager: paths: [/data/jirastudio/jira/home/caches/indexes/comments, /data/jirastudio/jira/home/caches/indexes/issues, /data/jirastudio/jira/home/caches/indexes/changes]
java.lang.IllegalStateException: You have called on this too early.  Spring has not auto-wired it yet.  You need to think more about your code paths!
	at com.atlassian.servicedesk.lifecycle.ServiceDeskComponentAccessor.get(ServiceDeskComponentAccessor.java:40)
	at com.atlassian.servicedesk.lifecycle.ServiceDeskComponentAccessor.vpOriginManager(ServiceDeskComponentAccessor.java:46)
	at com.atlassian.viewport.customfields.origin.VpOriginCustomFieldIndexer.vpOriginManager(VpOriginCustomFieldIndexer.java:43)
	at com.atlassian.viewport.customfields.origin.VpOriginCustomFieldIndexer.addDocumentFields(VpOriginCustomFieldIndexer.java:34)
	at com.atlassian.viewport.customfields.origin.VpOriginCustomFieldIndexer.addDocumentFieldsSearchable(VpOriginCustomFieldIndexer.java:22)
	at com.atlassian.jira.issue.index.indexers.impl.AbstractCustomFieldIndexer.addIndex(AbstractCustomFieldIndexer.java:46)
	at com.atlassian.jira.issue.index.IssueDocument.getDocument(IssueDocument.java:41)
	at com.atlassian.jira.issue.index.DefaultIssueDocumentFactory.get(DefaultIssueDocumentFactory.java:15)
	at com.atlassian.jira.issue.index.DefaultIssueDocumentFactory.get(DefaultIssueDocumentFactory.java:11)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer$IssueLockDocumentCreationStrategy$2.get(DefaultIssueIndexer.java:606)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer$IssueLockDocumentCreationStrategy$2.get(DefaultIssueIndexer.java:601)
	at com.atlassian.util.concurrent.ManagedLocks$ManagedLockImpl.withLock(ManagedLocks.java:303)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer$IssueLockDocumentCreationStrategy.get(DefaultIssueIndexer.java:600)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer$2.perform(DefaultIssueIndexer.java:164)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer$4$1.get(DefaultIssueIndexer.java:292)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer$4$1.get(DefaultIssueIndexer.java:288)
	at com.atlassian.jira.index.SimpleIndexingStrategy.get(SimpleIndexingStrategy.java:9)
	at com.atlassian.jira.index.SimpleIndexingStrategy.get(SimpleIndexingStrategy.java:5)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer$4.consume(DefaultIssueIndexer.java:287)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer$4.consume(DefaultIssueIndexer.java:279)
	at com.atlassian.jira.issue.util.DatabaseIssuesIterable.foreach(DatabaseIssuesIterable.java:66)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer.perform(DefaultIssueIndexer.java:278)
	at com.atlassian.jira.issue.index.DefaultIssueIndexer.reindexIssues(DefaultIssueIndexer.java:159)
	at com.atlassian.jira.issue.index.DefaultIndexManager.doBackgroundReindex(DefaultIndexManager.java:815)
	at com.atlassian.jira.issue.index.DefaultIndexManager.reIndexAll(DefaultIndexManager.java:289)
	at com.atlassian.jira.issue.index.DefaultIndexManager.reIndexAll(DefaultIndexManager.java:271)
	at com.atlassian.jira.issue.index.DefaultIndexManager.reIndexAllIssuesInBackground(DefaultIndexManager.java:335)  <+3> (NativeMethodAccessorImpl.java:39) (DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at com.atlassian.util.profiling.object.ObjectProfiler.profiledInvoke(ObjectProfiler.java:83)
	at com.atlassian.jira.config.component.SwitchingInvocationHandler.invoke(SwitchingInvocationHandler.java:28)
	at $Proxy122.reIndexAllIssuesInBackground(Unknown Source)
	at com.atlassian.jira.util.index.CompositeIndexLifecycleManager.reIndexAllIssuesInBackground(CompositeIndexLifecycleManager.java:83)
	at com.atlassian.jira.web.action.admin.index.ReIndexBackgroundIndexerCommand.doReindex(ReIndexBackgroundIndexerCommand.java:27)
	at com.atlassian.jira.web.action.admin.index.AbstractAsyncIndexerCommand.call(AbstractAsyncIndexerCommand.java:54)
	at com.atlassian.jira.web.action.admin.index.ReIndexBackgroundIndexerCommand.call(ReIndexBackgroundIndexerCommand.java:15)
	at com.atlassian.jira.web.action.admin.index.AbstractAsyncIndexerCommand.call(AbstractAsyncIndexerCommand.java:23)
	at com.atlassian.jira.task.TaskManagerImpl$TaskCallableDecorator.call(TaskManagerImpl.java:374)
	at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
	at java.util.concurrent.FutureTask.run(FutureTask.java:138)
	at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441)
	at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
	at java.util.concurrent.FutureTask.run(FutureTask.java:138)
	at com.atlassian.jira.task.ForkedThreadExecutor$ForkedRunnableDecorator.run(ForkedThreadExecutor.java:250)
	at java.lang.Thread.run(Thread.java:662)