Details
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Bug
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Resolution: Fixed
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Low
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6.0-EAP
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None
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6
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Description
Recently I have tried to upgrade the Jira instance (on testing server).
We use mysql as a database.
before: Jira v5.2.4#845-sha1:c9f4cc4
after: Jira v6.0-rc1#6085-sha1:c75e730
During the upgrade, data migration failed with the exception in the ticket description.
Exception thrown during upgrade: org.ofbiz.core.entity.GenericDataSourceException: SQL Exception while executing the following:UPDATE userassociation SET SOURCE_NAME = ? WHERE SINK_NODE_ID=? AND SINK_NODE_ENTITY=? AND ASSOCIATION_TYPE=? (Duplicate entry 'przemyslaw.marcinows-24682-Issue-WatchIssue' for key 'PRIMARY') com.atlassian.jira.exception.DataAccessException: org.ofbiz.core.entity.GenericDataSourceException: SQL Exception while executing the following:UPDATE userassociation SET SOURCE_NAME = ? WHERE SINK_NODE_ID=? AND SINK_NODE_ENTITY=? AND ASSOCIATION_TYPE=? (Duplicate entry 'przemyslaw.marcinows-24682-Issue-WatchIssue' for key 'PRIMARY') at com.atlassian.jira.ofbiz.DefaultOfBizDelegator.bulkUpdateByAnd(DefaultOfBizDelegator.java:694) at com.atlassian.jira.entity.Update$WhereContext.execute(Update.java:136) at com.atlassian.jira.entity.EntityEngineImpl.execute(EntityEngineImpl.java:45) at com.atlassian.jira.upgrade.tasks.UpgradeTask_Build6039$AssociationVisitor.lowercaseThisRow(UpgradeTask_Build6039.java:250) at com.atlassian.jira.upgrade.tasks.UpgradeTask_Build6039$AssociationVisitor.visit(UpgradeTask_Build6039.java:218) at com.atlassian.jira.upgrade.tasks.UpgradeTask_Build6039$AssociationVisitor.visit(UpgradeTask_Build6039.java:193) at com.atlassian.jira.entity.SelectQueryImpl$ExecutionContextImpl$3.consume(SelectQueryImpl.java:147) at com.atlassian.jira.entity.SelectQueryImpl$ExecutionContextImpl.consumeWith(SelectQueryImpl.java:129) at com.atlassian.jira.entity.SelectQueryImpl$ExecutionContextImpl.visitWith(SelectQueryImpl.java:142) at com.atlassian.jira.upgrade.tasks.UpgradeTask_Build6039.updateNamesToLowercase(UpgradeTask_Build6039.java:174) at com.atlassian.jira.upgrade.tasks.UpgradeTask_Build6039.updateSimpleColumn(UpgradeTask_Build6039.java:144) at com.atlassian.jira.upgrade.tasks.UpgradeTask_Build6039.doUpgrade(UpgradeTask_Build6039.java:95) at com.atlassian.jira.upgrade.UpgradeManagerImpl.doUpgradeTaskSuccess(UpgradeManagerImpl.java:673) at com.atlassian.jira.upgrade.UpgradeManagerImpl.runUpgradeTasks(UpgradeManagerImpl.java:526) at com.atlassian.jira.upgrade.UpgradeManagerImpl.doUpgrade(UpgradeManagerImpl.java:456) at com.atlassian.jira.upgrade.UpgradeManagerImpl.doUpgradeIfNeeded(UpgradeManagerImpl.java:399) at com.atlassian.jira.upgrade.UpgradeManagerImpl.doUpgradeIfNeededAndAllowed(UpgradeManagerImpl.java:333) at com.atlassian.jira.upgrade.UpgradeLauncher.checkIfUpgradeNeeded(UpgradeLauncher.java:100) at com.atlassian.jira.upgrade.UpgradeLauncher.start(UpgradeLauncher.java:49) at com.atlassian.jira.startup.DefaultJiraLauncher$3.run(DefaultJiraLauncher.java:117) at com.atlassian.jira.config.database.DatabaseConfigurationManagerImpl.doNowOrEnqueue(DatabaseConfigurationManagerImpl.java:315) at com.atlassian.jira.config.database.DatabaseConfigurationManagerImpl.doNowOrWhenDatabaseActivated(DatabaseConfigurationManagerImpl.java:209) at com.atlassian.jira.startup.DefaultJiraLauncher.postDbLaunch(DefaultJiraLauncher.java:105) at com.atlassian.jira.startup.DefaultJiraLauncher.access$100(DefaultJiraLauncher.java:30) at com.atlassian.jira.startup.DefaultJiraLauncher$1.run(DefaultJiraLauncher.java:69) at com.atlassian.jira.util.devspeed.JiraDevSpeedTimer.run(JiraDevSpeedTimer.java:33) at com.atlassian.jira.startup.DefaultJiraLauncher.start(DefaultJiraLauncher.java:64) at com.atlassian.jira.startup.LauncherContextListener.contextInitialized(LauncherContextListener.java:54) at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4791) at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5285) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150) at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1559) at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1549) at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.lang.Thread.run(Unknown Source) Caused by: org.ofbiz.core.entity.GenericDataSourceException: SQL Exception while executing the following:UPDATE userassociation SET SOURCE_NAME = ? WHERE SINK_NODE_ID=? AND SINK_NODE_ENTITY=? AND ASSOCIATION_TYPE=? (Duplicate entry 'przemyslaw.marcinows-24682-Issue-WatchIssue' for key 'PRIMARY') at org.ofbiz.core.entity.jdbc.SQLProcessor.executeUpdate(SQLProcessor.java:650) at com.atlassian.jira.ofbiz.DefaultOfBizDelegator.bulkUpdateByAnd(DefaultOfBizDelegator.java:685) ... 37 more
I had to
ALTER TABLE jira.userassociation DROP PRIMARY KEY;
and then upgrade proceeded to the sucessful end.
SELECT COUNT(*), SOURCE_NAME, SINK_NODE_ID FROM jira.userassociation GROUP BY SOURCE_NAME, SINK_NODE_ID HAVING COUNT(*)>1;
Results with hundreds of duplicated rows which prevents me from recreating primary key back again.
Attachments
Issue Links
- is cloned from
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JRADEV-21174 Loading...
